Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00948 ATGTTGGGTGATAGGAAACCTCTGGATTTGTATAAGCTCTTCACGGTGGTGAAGGAGAAAGGTGGTTATGATGTTGTTTGTAAGAACAGTTTGTGGGATTTGGTGGGAGAAGAATATGGGTTGGGTGTGAAGGATGGTTCCTCTGTGGAACTGGTTTACAGTAAGTACTTGAGTACTCTAGAGACATGGCTGAAGAATGTTGCTGACAGTAAGATCCCTGAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGCAAGCGTTTGATGGAGGTGCAAGCTGAATTCATGTTGGATGATTGTGCTGAGGAAGAGGTGGGGGAGAATGTATATGACTACCCAGATGGGAGGAAGTTGTGTGGTACTACTAGAGTTAAGGGCATGAAACCAGAGTTGAAAGGGGCTAAACTTGAGAGAGTGTATGACTATCTAGATGGGAGGAAGTTGTGTGGTACTAATAGAGTGAAAGGCATGAATCCAGAGTCTAATGGGGCCAAGAAAGTTCAGAATGGAGGACTTGTTGATTTTAATAAGCAGGATCATAGGATGAATGAGTCTAGTCTCAAAAACTTGTGCAACCATAATGCTGCAATGGAAAAAATGGAAGAGTTTGATGGAGGCAAAAAATTAGTAGTGGATGTATCTGGTACAGTAAACAACATGCCTGAAATATCAGATGGAAGCAAGGGGTGTGAAAATGAAGATGATAATTATGATGGTGTTGTGATGTTGGATGCATCCAGTGTTAATAAAGGGAGTTTTGGTTGTAAGAGGAAGAGAGAGTCTATGTCAGAAATGCTAAGCTGGGTTACTAGCATTGCAAAGAATCCTTGTGATCCTTTAGTTGGTTCATTGCCTGAAAAGTCAAAGTGGAAGTCTTACAGTAATCAGGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAAAAAGGTTTTGAATCAAGCATTGAACAACTTAGGTTGCAGGCTCAGAAGATGCATCCTTCCATGTATGATGATCACCTTGGGGCAACTTACAATCTTAGAGACAGGTTCAAATGTGATAAGAGGCTTTTAGTTAGAAAATCTACATCTGATGGAGTCTCTTCAGATTCATCAGGAGGAACACAGAGAGATTGTGCTAAGAAAAAGTTACTTGATTCCTGTACTGCACACTCAAGTCTTGATGGATGTAGCACAGTGCACATTCCTCTGGGGCCAAACCATCAAGCTGAAGTGCCTGAGTGGACTGGCATGACTTATGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCAACAAAATCTGTAAATTCCAAACTTATTGAAAGGGACCCCATTGGAAAGGGAAGACAAGATTCATGTGGTTGTCAAGTAAAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTACTGAAAAAAGGGCTAAAGTTAAGTTGGAATTAGGTACGGCCTTCTACCTGTGGAATTTACATAAGGTAGGTGAAGACGTTAGGCGGTTGTGGACAAAGCAAGATGAGAAGAAATTCCAAGATGTGGTGAAATCAAACCCTCCTTCACTTGATAGGTGTTTCTGGGATCATATTTTTAAAACATTTCCTATGAAGAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGATACCAGAATAGGCACACTCAAGATAACATTGACAGTGATGATGATGAATCAGAATATGGACCATTGAGGAATGTTTTTGGACATCAAACACATAAATCACACAGCTTCACCTTATTATCCCCTAAGAAGCCACAGACAAAGGGAAGATAG 1803 0.4099 MLGDRKPLDLYKLFTVVKEKGGYDVVCKNSLWDLVGEEYGLGVKDGSSVELVYSKYLSTLETWLKNVADSKIPECDLVDDRVKFGKRLMEVQAEFMLDDCAEEEVGENVYDYPDGRKLCGTTRVKGMKPELKGAKLERVYDYLDGRKLCGTNRVKGMNPESNGAKKVQNGGLVDFNKQDHRMNESSLKNLCNHNAAMEKMEEFDGGKKLVVDVSGTVNNMPEISDGSKGCENEDDNYDGVVMLDASSVNKGSFGCKRKRESMSEMLSWVTSIAKNPCDPLVGSLPEKSKWKSYSNQEIWKQVLLFREAVFLKKGFESSIEQLRLQAQKMHPSMYDDHLGATYNLRDRFKCDKRLLVRKSTSDGVSSDSSGGTQRDCAKKKLLDSCTAHSSLDGCSTVHIPLGPNHQAEVPEWTGMTYESDSKWLGTQIWPTKSVNSKLIERDPIGKGRQDSCGCQVKGSVECVRFHITEKRAKVKLELGTAFYLWNLHKVGEDVRRLWTKQDEKKFQDVVKSNPPSLDRCFWDHIFKTFPMKSRENLVSYYFNVFLLQRRGYQNRHTQDNIDSDDDESEYGPLRNVFGHQTHKSHSFTLLSPKKPQTKGR. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00948 600 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Seca1g00948 600 Gene3D - 2 74 IPR036431 GO:0003677
Seca1g00948 600 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 595 - -
Seca1g00948 600 SMART ELM2_2 399 449 IPR000949 -
Seca1g00948 600 MobiDBLite consensus disorder prediction 556 572 - -
Seca1g00948 600 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Seca1g00948 600 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Seca1g00948 600 CDD ARID 4 61 - -
Seca1g00948 600 MobiDBLite consensus disorder prediction 556 600 - -
Seca1g00948 600 MobiDBLite consensus disorder prediction 579 600 - -
Seca1g00948 600 SMART bright_3 1 66 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00948 Seca-Chr1 13129792 13135363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca1g00948 ARID 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00948 - - gmx:100780550 843.573