Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00944 ATGGGAGGTTGCTGTTGTTCTGCAAAAAAACCTCATCAGCAAGGAACACCAGTGTATTACTATTACCCACCAACTTCTGAAGAGAGTGAGTCTTTAACCGCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGCTTGAACCTGGATGCATCCATACCTGATACTTTCCATCCCCCTCCTGTGCCTTTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACCGATTCTGAGTCTGGCAGAGAAACAGCTAGTGTTAGTAGCTATGAAACTTCAATGACACGTGAAGATATTGAAGAATCCGATTTCAAAGCTCCAGCAAAATCTGCACCTATATCTCCAAAGAAGGAAGCACTATCAAAAGCAAATGAAACTCAAGTATTAGTGATAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTTTGGGTTTTGTATTAA 564 0.406 MGGCCCSAKKPHQQGTPVYYYYPPTSEESESLTANDGTNASLNAGFLVGLNLDASIPDTFHPPPVPLPYDMVLGGSASTDSESGRETASVSSYETSMTREDIEESDFKAPAKSAPISPKKEALSKANETQVLVIEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQVWVLY. 188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00944 187 SMART ring_2 140 180 IPR001841 -
Seca1g00944 187 SUPERFAMILY RING/U-box 133 186 - -
Seca1g00944 187 MobiDBLite consensus disorder prediction 73 114 - -
Seca1g00944 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Seca1g00944 187 CDD RING-H2_AIRP1-like 136 183 - -
Seca1g00944 187 Pfam Ring finger domain 139 180 IPR001841 -
Seca1g00944 187 MobiDBLite consensus disorder prediction 76 96 - -
Seca1g00944 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Seca1g00944 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 185 - -
Seca1g00944 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca1g00944 Seca-Chr1 13073144 13076722 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00944 1 186 C3H Transcription Factor Family AT4G00335 53.763 2.13e-64 195
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00944 - - gmx:100812687 307.76