Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g00944 | ATGGGAGGTTGCTGTTGTTCTGCAAAAAAACCTCATCAGCAAGGAACACCAGTGTATTACTATTACCCACCAACTTCTGAAGAGAGTGAGTCTTTAACCGCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGCTTGAACCTGGATGCATCCATACCTGATACTTTCCATCCCCCTCCTGTGCCTTTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACCGATTCTGAGTCTGGCAGAGAAACAGCTAGTGTTAGTAGCTATGAAACTTCAATGACACGTGAAGATATTGAAGAATCCGATTTCAAAGCTCCAGCAAAATCTGCACCTATATCTCCAAAGAAGGAAGCACTATCAAAAGCAAATGAAACTCAAGTATTAGTGATAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTTTGGGTTTTGTATTAA | 564 | 0.406 | MGGCCCSAKKPHQQGTPVYYYYPPTSEESESLTANDGTNASLNAGFLVGLNLDASIPDTFHPPPVPLPYDMVLGGSASTDSESGRETASVSSYETSMTREDIEESDFKAPAKSAPISPKKEALSKANETQVLVIEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQVWVLY. | 188 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g00944 | 187 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
Seca1g00944 | 187 | SUPERFAMILY | RING/U-box | 133 | 186 | - | - | |
Seca1g00944 | 187 | MobiDBLite | consensus disorder prediction | 73 | 114 | - | - | |
Seca1g00944 | 187 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 185 | IPR013083 | - | |
Seca1g00944 | 187 | CDD | RING-H2_AIRP1-like | 136 | 183 | - | - | |
Seca1g00944 | 187 | Pfam | Ring finger domain | 139 | 180 | IPR001841 | - | |
Seca1g00944 | 187 | MobiDBLite | consensus disorder prediction | 76 | 96 | - | - | |
Seca1g00944 | 187 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
Seca1g00944 | 187 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 36 | 185 | - | - | |
Seca1g00944 | 187 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 116 | 185 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g00944 | Seca-Chr1 | 13073144 | 13076722 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g00944 | 1 | 186 | C3H Transcription Factor Family | AT4G00335 | 53.763 | 2.13e-64 | 195 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g00944 | - | - | gmx:100812687 | 307.76 |