Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00940 ATGGGGTTCCCCGTAGGGTACCCTGAAGTTTTGGTCCCAAACGTGTTCCTCTACCTTCTCTCCTTCCTCGCCTTTCTCCGCTCCCTCGTCTTCTCCCTCTTCCACCTTCTCCACCTCTCCGACCTCCTCGACACCGACGTCATCGCCGTCTCCGGCGCCGCCTCCTCGTCGGAATCTCACCCCCGAGTCCCCACTCTATCGGCGCTCCTAATCCGCGAATATCTCCCCGTCGTCAAGTTCGGCGACCTCGCCGGAGCTTCGTCGCCGGCGGAGGCAGGGTGCGCGGTGTGTCTGAGCGAATTCTCGGAAGAGGAAGAAATCAGGTGTATGGCGAACTGCAAGCACTTTTTCCACAGGGCGTGTGTGGACCGTTGGATGGATCACGATCAGAAAACGTGTCCACTTTGTAGGACCCACTTCGTACCATATGATCTGATGGACGATTATAATCAACGCCTTTGGGTTGCTTCTGGTGTTTCTCAGATTTATCAACATGACTACACTGATATTGCTTCCTTCTGA 522 0.5536 MGFPVGYPEVLVPNVFLYLLSFLAFLRSLVFSLFHLLHLSDLLDTDVIAVSGAASSSESHPRVPTLSALLIREYLPVVKFGDLAGASSPAEAGCAVCLSEFSEEEEIRCMANCKHFFHRACVDRWMDHDQKTCPLCRTHFVPYDLMDDYNQRLWVASGVSQIYQHDYTDIASF. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00940 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 142 IPR013083 -
Seca1g00940 173 SUPERFAMILY RING/U-box 93 143 - -
Seca1g00940 173 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Seca1g00940 173 SMART ring_2 94 136 IPR001841 -
Seca1g00940 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 147 - -
Seca1g00940 173 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00940 Seca-Chr1 13029026 13029547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00940 1 158 C3H Transcription Factor Family AT1G63840 45.342 5.32e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00940 K16281 - gmx:100803226 215.698