Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00938 ATGACCACTGTGGCTGAATATATTTCAATATTCACCATGGAACTGGTATCTTCTTCCTCCAGAGGAGTAAACCCACTGTTATGGACCTACCATGTGTTTTTGAGTTTTAGGGGAGAAGACACTCGCAGAGGATTCACTGACCATCTGTGTGCTTCGCTAGAAAGAAAAGGAATCACAACTTTCAAGGATGACAAAGACCTTGAGAAAGGACAAGCCATTTCAAAAGAGCTCCTCAAAGCAATTGAAGAATCTATGTTTGCAATCATCATCCTCTCACCAAACTATGCTTCCTCCACTTGGTGTTTGGATGAGATCCAGAAGATTGTTGAGTGCAGAAACAACCAGGCTCTAGAACTCATGCCAGTTTTCTATGGTGTCGACCCCTCTGATGTGAGGCGTCAAAGAGGAAGCCTGGAGGAAGCTTTCAAAAATCATGAAGAGAATTTCGGACAAGACAGTGAGAAGGTTAAAAAATGGAGACATGCGTTAACACAAGCCTCAAGTTATTCTGGTTGGGACTCCAAGGATCGACATGAGGCAGAGCTCGTGGAAAGCATTGCTCAACACATACATAAAAAGCTTATTCCAAAATTGCCATATTGCACAGAAAACATTGTTGGGATTGCTTCAAGGGTGAATGAAGTGAACTGGATCATGGGTATGCGGTTGAATGATGTTCGCTTTATAGGCGTATGGGGCATGGGTGGCATAGGTAAGACAACTATTGCTAGAGCTGTCTATGAAGCAATCAAAGTCAATTTTAAAGTAACTTGCTTTCTTGCGAGCATTAGAGAGAGAGATGAGACAAATGGTTTGGTTCAAGTACAAAAAGATCTTCTTTCTTATCTAAATATAAATAGCTGTGATTTTCATGATTTATATGATGGGAAAAAGACAATACAAAACTCTTTATGCAACAAAAAGGTTCTTATTGTTCTCGATGATGTAAGCGAATCAAAGCAATTGGAGAATTTGGCTGGGAGTCAAGATTGGTTTGGTCCAGGAAGCAGGGTAATAATCACAACTAGAGATATGCACCTGCTAAGGATACATGGAGTGCATAAAACTTACAAGGTTGGAGGTTTAGTCCAAAATGAAGCTCTTCATCTCTTTTGCTTGAAAGCCTTTAGACAAGACCAACCTCAAAATGGGTATTTGGATTTGTCCAAAGAAGTGGTAGAATATACTGGAGGTCTTCCATTGGCACTAGAAGTATTGGGTTCTTATCTTAATGGAAGAACCATTGATGTTTGGCACAGTGCTTTGAAACAAATAAGAAGGTTTCCTCTCTCCAAAATTCAAGATACACTGAACATAAGTTATGAAGGTTTAAATCCTATGGAGAAGGATCTGTTTCTAGATATTGCGTGTTTCTTCAAAGGAATGCAAAAAGATAAAGTAATTAACATAGTAGAAAATTGTAGGAATTGTGCCAGAATAGGAATTGAAGTTTTAATTGAAAGATCTTTGATAACTGTAAATAAGTGGGGTGAGTTGGAAATGCATGATTTACTTAAAGAAATGGGCAGGAATATTGTATTTCAAGAATCTGCAAACAATCCTGGCCAACAAAGCAGGTTGTGGTCTCAAGAGGATATTGATCATGTATTGACAAAAAGCAAGGGAACTAAAGCAATTCAGAGTATAGTTTTGAACCCAACTCAACAATATGAAGCACACTGGAGCCCTAAAGCCTTCTCCGAGACAACAGAGCTAAAATTTCTCAAGTTAAGTGATGTGCAACTTCATTCTGACCTGAACTGCCTTCCTAGTTCGCTAAAAGTTCTTCACTGGAATGGGTGCTCTTTGAAAACCCTGCCACTTACCAATCAACTGTATGAATTTGTTGACATTAAACTGTCTCATAGCAAAATTGAACAACTTTGGCATAGTAAAAAGTTTCTGGAAAAGCTGAAGTACTTGGATTTGAGTTTTTCCAAAAATCTAAAGCGATCTCCTGATTTTTCTGGGGTTCCAAACCTTGAAAAATTGATCCTCGAAGGTTGTACAAGGCTCACTGAGGTTCATCCATCCCTTTTGCACCAGAAGAAACTTGTTATAATGGATTTAAAAGACTGCAAAAGTCTTAAATCCCTTCCAGGTAAATTGGAGTTGAGTTCCCTGACAAAGTTACTTCTTACTGGTTGCTCTAAATTTAAAAATGTTCCAGAGTTTGGCGAAAGTATGAAACATCTATCAGTGCTTTCTTTAGAGGGAACAGCAATAACAAAACTACCCTCGTCAGTTGGATGTCTAATGGGCCTTGCTGATTTGAACTTAAAGGATTGCAAAAACCTTGTTTGCCTTCCAGATACCATTGATAGATTGAAGTCTCTTAGTATCCTGAACACTTGTGGATGCTCAAAGTTCAGTAGTTTGACAGAGGGTTTAAAAGAAAAGGAGTGTTCAGAGGAACTTTGCCCCATTGAATCTGCTAATAAAAGCAAAAAATTATCATTTGCTTGGGGGAAAGAGCCAGTATCTAGTTCATTGAGGACTAAGCCAACTGTCATTAGACTCAGATCACCCGGTTCTGTCTTAAGTCTACATTCTCTGAGCATTATGAATTTAAGCTACTGCAATTTGTCTGAAGAATCAATCTTGCATATTTCTTGCGACCTACCCTGTTTGAAGTTTTTGGATCTAAGTGGGAACAATTTTGTTCGTGTGCCATTTAATATTTCTAAACTTACAAAGCTGGAATATCTTGGGCTAAATTATTGCCAAAAACTTCAATGGTTGCCAGAACTTCCATCAAGTATAAAAGAATTGGATGCAAGCCAGTGTGATTCACTGCAAACCTCCAAATTCAATCCATACAGTCTCTTTGCTTCACTTGGACAATATCCTTCTGAGGTCTGTTATCTGTATACTTGA 2877 0.3848 MTTVAEYISIFTMELVSSSSRGVNPLLWTYHVFLSFRGEDTRRGFTDHLCASLERKGITTFKDDKDLEKGQAISKELLKAIEESMFAIIILSPNYASSTWCLDEIQKIVECRNNQALELMPVFYGVDPSDVRRQRGSLEEAFKNHEENFGQDSEKVKKWRHALTQASSYSGWDSKDRHEAELVESIAQHIHKKLIPKLPYCTENIVGIASRVNEVNWIMGMRLNDVRFIGVWGMGGIGKTTIARAVYEAIKVNFKVTCFLASIRERDETNGLVQVQKDLLSYLNINSCDFHDLYDGKKTIQNSLCNKKVLIVLDDVSESKQLENLAGSQDWFGPGSRVIITTRDMHLLRIHGVHKTYKVGGLVQNEALHLFCLKAFRQDQPQNGYLDLSKEVVEYTGGLPLALEVLGSYLNGRTIDVWHSALKQIRRFPLSKIQDTLNISYEGLNPMEKDLFLDIACFFKGMQKDKVINIVENCRNCARIGIEVLIERSLITVNKWGELEMHDLLKEMGRNIVFQESANNPGQQSRLWSQEDIDHVLTKSKGTKAIQSIVLNPTQQYEAHWSPKAFSETTELKFLKLSDVQLHSDLNCLPSSLKVLHWNGCSLKTLPLTNQLYEFVDIKLSHSKIEQLWHSKKFLEKLKYLDLSFSKNLKRSPDFSGVPNLEKLILEGCTRLTEVHPSLLHQKKLVIMDLKDCKSLKSLPGKLELSSLTKLLLTGCSKFKNVPEFGESMKHLSVLSLEGTAITKLPSSVGCLMGLADLNLKDCKNLVCLPDTIDRLKSLSILNTCGCSKFSSLTEGLKEKECSEELCPIESANKSKKLSFAWGKEPVSSSLRTKPTVIRLRSPGSVLSLHSLSIMNLSYCNLSEESILHISCDLPCLKFLDLSGNNFVRVPFNISKLTKLEYLGLNYCQKLQWLPELPSSIKELDASQCDSLQTSKFNPYSLFASLGQYPSEVCYLYT. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00938 958 ProSiteProfiles TIR domain profile. 28 194 IPR000157 GO:0007165
Seca1g00938 958 Gene3D Ribonuclease Inhibitor 529 726 IPR032675 -
Seca1g00938 958 Gene3D - 192 357 IPR027417 -
Seca1g00938 958 SUPERFAMILY L domain-like 552 931 - -
Seca1g00938 958 Gene3D - 27 191 IPR035897 -
Seca1g00938 958 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 724 IPR044974 GO:0006952
Seca1g00938 958 Pfam NB-ARC domain 224 442 IPR002182 GO:0043531
Seca1g00938 958 Pfam TIR domain 30 200 IPR000157 GO:0007165
Seca1g00938 958 PRINTS Disease resistance protein signature 396 410 - -
Seca1g00938 958 PRINTS Disease resistance protein signature 228 243 - -
Seca1g00938 958 PRINTS Disease resistance protein signature 303 317 - -
Seca1g00938 958 PRINTS Disease resistance protein signature 633 649 - -
Seca1g00938 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 455 IPR027417 -
Seca1g00938 958 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 172 IPR035897 -
Seca1g00938 958 SMART LRR_typ_2 874 897 IPR003591 -
Seca1g00938 958 SMART LRR_typ_2 729 752 IPR003591 -
Seca1g00938 958 SMART LRR_typ_2 658 682 IPR003591 -
Seca1g00938 958 Gene3D - 362 445 IPR042197 -
Seca1g00938 958 Gene3D Ribonuclease Inhibitor 727 951 IPR032675 -
Seca1g00938 958 SUPERFAMILY "Winged helix" DNA-binding domain 431 537 IPR036390 -
Seca1g00938 958 SMART till_3 29 169 IPR000157 GO:0007165
Seca1g00938 958 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00938 Seca-Chr1 12968247 12972351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00938 30 802 WRKY Transcription Factor Family AT4G12020 30.905 4.85e-100 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00938 - - gmx:100815486 1178.31