Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00936 ATGGCATTCGTTGTAGGTGAAGCTTCTTCTTCTTCTTCTTCTAGACCAGTTCCACGAGTGTTTTTGAGTTTTAGGGGAGAAGACACTCGCAAAGGATTCACTGACCATCTCTATGCTGCACTTGAAAGAAAAGGAATCACAACATTCATGGATGACAAAAACCTTGAGAAAGGACAAGCCATTTCAAATGAGCTCCTGAAAGCAATTGAAGAATCTATGTTTGCAATCACCATCCTCTCACCAAACTATGCTTCTTCCACTTGGTGTTTGGATGAGGTCCAAAAGATTGTTGAGTGTAGCAACAACCTTGATCTTCAGGTTTTGCCGGTTTTCCATGGTGTTGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCTATAAGGAAGCTTTCATAAGGCATAAAGAGAAATTTGGACAACACAGTGACAAGATTAGAAGATGGAGAAATGCGTTAAAACAAGTTACCAATTATTCTGGGTGGGACTCCAAGGATCGGCATGAGGCAGCACTTGTGGAAATTATTGCTCGACACATACAAAAAAAGGTTATTTCAAAATTGCCATCTTGTACTGACAACCTTGTTGGGATTGCTTCAAGGGTGAAGGAAGTGAAGAGGCTCATAGGCATGGGGTCTAATGATGTTCGCTTTATAGGCATATGGGGCATGGGTGGCATAGGTAAGACAACTATTGCTAGAGCAGTCCATGAATCAATTCAACAAAATTTTGAGGTTTCTTGCTTTCTTGCCAATGTTAGAGAGCTATCTGAGACTAATGGTTTAGTTCACATTCAAAGAGAACTTGTTTCTAATCTGAATATAAAGAGTGATTTTCATAACTTGTATGATGGGAAAAAGACATTACGAAACTCTTTATGCAACCAAGCGGCTCTTCTTGTTCTTGATGATGTAAGTGAAATAAGCCAATTGGAGAGTTTGGCTGGGAATCAAGATTGGTTTGGTCCTGGAAGCAGAGTAATAATCACAACCAGAGACAGGCACTTGCTAAGGATACATGAAGTGCATGAAATTTATAAGGTTGGAGGCTTAGTCCAAACTGAAGCACTTCGTCTCTTTTGTTGGAAAGCCTTTAAACGAGATCAACCTGAAGAAGGGTATTTGGATTTGTCCAGAGAAGTGGTCAAATATAGTGGTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCTTTCTTTATGGAAGGAGTGTTGATGTTTGGCATAGTGCTGTGAAAAAAATAAAAAGCATTCCACAGGCCAAAATTCTAGATACACTGAAAATAAGTTATGAAGGTTTAGATTCAATGGAGAAGAGTATTTTTCTAGATATTGCCTGTTTCTTCAAAGGAATGAACAGAAATAGTGTATCAAAGATACTAGAAAATTTTGGTTATTATTCCTCAATTGAAATTGAAATTTTGATTGAAAGATCTTTGATAACTGTAGAACGGGGAAGTGATAAGTTGGAGATGCATGATTTGCTTCAAGAAATGGGCAGGAATATTGTTCTTAATGAATCTCCAAATGATCCTGGCAAACGTAGCAGGGATCATCTCTTCCTCTGCCATTGTCGCTGCTTCCTCCTTAGCCTTTCGTTCTCATCCAACAGCTCCGTCGGCGCTCTCGACGACGACGAGTTCGACGAAATCACCTGCTCCTCCCCTGAGTTCGATAGCGACACGATCGGCTTCGCCGTCGGAATCGCAGCAAGCGGCAACGGCAAGGGAACCGCTACGGGAACTGAAGCAATCCAAAGTATAATTCTAAGCCCATCCAAACCATATGTAGCACGTTGGAGCAGTGATGTCTTCTCAAAAACAAGTCAGCTGAAATTTTTGAGTTTATGTCGGGTGCAACTTCCCATTGGCCTCAACTGTCTTCCTAGTTCACTAAAAGCTCTTCACTGGATAGGATGTCCTCTGAAGTCTCTGCCCTTTGGAAACCAACCGTATCAAGTTGCTGAAATCAAACTGTGTTTTAGCAGAATTGAACAACTTTGGCCTGGAAAAAAGTTTCTAGGGAAGCTGAAGTACATGGATTTGAGTTATTCCCGGAATCTAAAGCGATTACCAGATCTTTCTGCTGTTCCCAATCTTGAAACACTTGATCTTAGACATTGTTCACTCCTTACAGAGGTTCATCCCTCCCTTGTTCACCACAAGAGCCTTGTTCTAATTAATTTAGATAGCTGCAGAAGTCTTAAAACTCTTCCAAGTAAATTGGAGATGAGTTCCCTGAAGGAATTAATTCTTAGTAACTGCTCTAGATTTGAACAACTTCCTGAATTTGGGGAAAGCATGAAACATCTGTCAATGCTTTCTTTAAAAGAAACGGCTATAAGAAAACTACCCACATCACTTGGATGTTTAGTTGGCCTTTCTGAATTGAACTTGGAGAATTGCAAAAATCTTGTTTTCCTTCCAGAGTCCATGCATGGATTGCAGTCCCTCAGAATTCTGAAGGCTTCTGGTTGCTCAAATCTCTGTAGATTACCAGAGGATTTAAAGGAAATGAAGTGTTTGGAGGAACTTTGTGCTACTGAAGTCAGTGCATTATCTTTTGAAGGGGGGAAAGGAACTCCAACTGGACTCAGATTGAGATTGCCACTTTCTGTCTCAAAACTGCCCTTTTTGAGCAGTCTAGATTTAAGTTACTGCTCTCTATCTGAAGAATCATTCCCTGATGATTTTTGTCAGTTCCCTTCACTAGAAGATTTAAATCTAAGTGGCAACAATTTTGTTAGAGTACCAATAAGTATTCATAAACTTTCAAAGCTTAGATATCTTTACCTAAACCATTGCCCAAAGCTTCAATTATTGCCAAAGCTTCCATCAGAAATATTTGAATTGGAAGCATGCAATTGTGATTCACTGGAAACATTTGAATTCAATCCTTTAAAGACATGCAATGTCTTTGAATCACCTGGCCAAGACCGTAGTCAGGTCTTTAGCATGCTGATCACAGGGTGTGAAATTCCATCATGGTTTGACCATCAAGAAGAAGGTAGCTATGTATCAGTCCCACATAATTTCCCTCTAAATGAAAGGGTTGGAATTGCTCTGTGTTTTCTATTCCTAACATCTGAGGCACGCTATGATCCAATAGAATGCTCTTTGGCTGGCCACAAAGGTAATACATTCATCACCCGGAAGCTTTTACGTCCTATGAAGCGAGGTTTTCACCTTTACATTCTTTGTTTGAATTTGAACAATGATGATTTCAGTAATGAAATTCACGAAGATAGTCATTTTAGACTGTTTCATAGATCTAAAGAAAGCCCCTATGCAACATTACAAAAAAAAGGTGGAATTCACAAACACTCTGGTTTCTCTGGACTAAAGCCTAATTATGATTTTCAAGTTGTGAGATCTGGGGCCCGTTTGGTACATAAGCAGGATGTTGAAGATTTAAAAAAAATCATTGAGCAAATGCAACAAGAGTCAGTGATAGTTGAAGTTGACACAGTTAGTTCTTGA 3471 0.3982 MAFVVGEASSSSSSRPVPRVFLSFRGEDTRKGFTDHLYAALERKGITTFMDDKNLEKGQAISNELLKAIEESMFAITILSPNYASSTWCLDEVQKIVECSNNLDLQVLPVFHGVDPSDVRHQRGSYKEAFIRHKEKFGQHSDKIRRWRNALKQVTNYSGWDSKDRHEAALVEIIARHIQKKVISKLPSCTDNLVGIASRVKEVKRLIGMGSNDVRFIGIWGMGGIGKTTIARAVHESIQQNFEVSCFLANVRELSETNGLVHIQRELVSNLNIKSDFHNLYDGKKTLRNSLCNQAALLVLDDVSEISQLESLAGNQDWFGPGSRVIITTRDRHLLRIHEVHEIYKVGGLVQTEALRLFCWKAFKRDQPEEGYLDLSREVVKYSGGLPLALEVLGSFLYGRSVDVWHSAVKKIKSIPQAKILDTLKISYEGLDSMEKSIFLDIACFFKGMNRNSVSKILENFGYYSSIEIEILIERSLITVERGSDKLEMHDLLQEMGRNIVLNESPNDPGKRSRDHLFLCHCRCFLLSLSFSSNSSVGALDDDEFDEITCSSPEFDSDTIGFAVGIAASGNGKGTATGTEAIQSIILSPSKPYVARWSSDVFSKTSQLKFLSLCRVQLPIGLNCLPSSLKALHWIGCPLKSLPFGNQPYQVAEIKLCFSRIEQLWPGKKFLGKLKYMDLSYSRNLKRLPDLSAVPNLETLDLRHCSLLTEVHPSLVHHKSLVLINLDSCRSLKTLPSKLEMSSLKELILSNCSRFEQLPEFGESMKHLSMLSLKETAIRKLPTSLGCLVGLSELNLENCKNLVFLPESMHGLQSLRILKASGCSNLCRLPEDLKEMKCLEELCATEVSALSFEGGKGTPTGLRLRLPLSVSKLPFLSSLDLSYCSLSEESFPDDFCQFPSLEDLNLSGNNFVRVPISIHKLSKLRYLYLNHCPKLQLLPKLPSEIFELEACNCDSLETFEFNPLKTCNVFESPGQDRSQVFSMLITGCEIPSWFDHQEEGSYVSVPHNFPLNERVGIALCFLFLTSEARYDPIECSLAGHKGNTFITRKLLRPMKRGFHLYILCLNLNNDDFSNEIHEDSHFRLFHRSKESPYATLQKKGGIHKHSGFSGLKPNYDFQVVRSGARLVHKQDVEDLKKIIEQMQQESVIVEVDTVSS. 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00936 1156 Gene3D - 182 343 IPR027417 -
Seca1g00936 1156 SUPERFAMILY L domain-like 587 963 - -
Seca1g00936 1156 Gene3D Ribonuclease Inhibitor 859 994 IPR032675 -
Seca1g00936 1156 Gene3D Ribonuclease Inhibitor 740 852 IPR032675 -
Seca1g00936 1156 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Seca1g00936 1156 Pfam NB-ARC domain 204 418 IPR002182 GO:0043531
Seca1g00936 1156 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 761 IPR044974 GO:0006952
Seca1g00936 1156 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Seca1g00936 1156 Gene3D Ribonuclease Inhibitor 582 739 IPR032675 -
Seca1g00936 1156 Pfam Leucine rich repeat 876 932 IPR001611 GO:0005515
Seca1g00936 1156 PRINTS Disease resistance protein signature 216 231 - -
Seca1g00936 1156 PRINTS Disease resistance protein signature 383 397 - -
Seca1g00936 1156 PRINTS Disease resistance protein signature 290 304 - -
Seca1g00936 1156 PRINTS Disease resistance protein signature 692 708 - -
Seca1g00936 1156 SUPERFAMILY "Winged helix" DNA-binding domain 419 505 IPR036390 -
Seca1g00936 1156 Gene3D - 13 181 IPR035897 -
Seca1g00936 1156 Coils Coil 1125 1145 - -
Seca1g00936 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Seca1g00936 1156 Pfam TIR domain 20 195 IPR000157 GO:0007165
Seca1g00936 1156 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Seca1g00936 1156 SMART till_3 17 157 IPR000157 GO:0007165
Seca1g00936 1156 Gene3D - 349 432 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00936 Seca-Chr1 12950229 12959428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00936 12 850 WRKY Transcription Factor Family AT4G12020 29.070 4.17e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00936 - - gmx:100815486 1123.61