Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00934 AGGCTGAGAGAAAAGGAAACCATCTTCGCTGCTGTTCATCGTCCTCCATCGTCGCCGCCGTTCACCGTCTTCATCGCCGGAGGCCACGAGCACAAGATTTTGATCAGTGTTCCTGGAATCTGTTCTGCCTCACTGCTTCCAACTTCTGTCTCATATAAGCATGTTCATATTCTGGTGGTTTTCCTCACTGGAGTTGCAAGCACTGTCAGAGGTGGTGCTGATAGCTGGCCAGAATCTGAGATTACAAGGCTCCAACAGTTGAGGACTGAGATGGAGACAAGGTTTATTCCACAAAGTGGGGGGTGTTCAGAAGAGGTTACATGGGAGGAGGTAGCAACCAAAATGGCTTGTTTTGGATATGAGAGAACTGCTTTGATGTGCAAGGAGAAATGGGAAACACCAAAAGGGTCATACTTACCTTTTTCCACTTTTGTATTTCAGTTCTTGCAAAGGATGGATGAAACTAAATCGAAGGAAGAAGAGAAAGTTCAGCTTCAAAGGATACCCAAGGTTCCAGATGTAGAGCAGTTGCCTCAATTTCTAGATGGACTACATGCTCAAGAAGGGATGGAACCCTTGCCTTGA 585 0.4615 RLREKETIFAAVHRPPSSPPFTVFIAGGHEHKILISVPGICSASLLPTSVSYKHVHILVVFLTGVASTVRGGADSWPESEITRLQQLRTEMETRFIPQSGGCSEEVTWEEVATKMACFGYERTALMCKEKWETPKGSYLPFSTFVFQFLQRMDETKSKEEEKVQLQRIPKVPDVEQLPQFLDGLHAQEGMEPLP. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00934 194 FunFam Trihelix transcription factor GT-2 76 139 - -
Seca1g00934 194 Pfam Myb/SANT-like DNA-binding domain 74 138 IPR044822 -
Seca1g00934 194 Gene3D - 76 139 - -
Seca1g00934 194 ProSiteProfiles Myb-like domain profile. 75 133 IPR001005 -
Seca1g00934 194 CDD GT1 76 133 - -
Seca1g00934 194 PANTHER FI21293P1 73 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00934 Seca-Chr1 12933300 12940134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00934 69 132 Trihelix Transcription Factor Family AT5G03680 47.692 1.20e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g00934 Myb_DNA-bind_4 4.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00934 - - aprc:113870891 112.849