Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00931 ATGGAGACGGAAGGAGAGAGAGAAGGAGGAGGAGGAGATGGAGAACAGAACGAGTCCGACGAGTCAACACGGCCCGATGAGGAGGAATTGGTGGAGGAGATCCAACAAGTCATTGAATCGGTGGTTCAATTTGGCGAGTATCGAAGGACACAAAGGAAGGAGGCTCATAACCTCGCACGTCGTTTCAAGCTCATGTTACCTCTCATGGAAGACCTTCGTGACCTCCAACAACCCGTTCCTCAAAACGGCGTCGCTTGGTTGATCAAACTCAGGGACGCCCTTCTATCTGCCAAGGACTTGTTGAGATTATGCAGCCAAGGAAGCAAGATTCACCTCGCATTGGAGGGTGAGGCAGTTATGATAAAGTTCCAGAGTGTGTATGAAAAATTAAGCCAAGCATTTGATGGTGTGCCTGGTGATGAATTGGGGATCTCAGATGAAGTCAGAGAACAGCTTGAGCTAATGCATGTGCAACTGAGGCGGGGGAAGAGAAGGACTGATACACAGGACATAGAACTGGCAATGGACATGATAGTGGTATTCTCTGATGAAGATGGTCGTAATGCTGATCGTGCTATTGTTGAAAGGCTTGGAAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTTGAGGTAGAAACAATGGCTGTTAAGAACCTTGCTACAGAAAGAAAAGGGCAACAGGTTGAGAGTACCCAGAGAATAATTGACCTTCTTAACAAATTCAAACGAGTTGCAGGTATGGAAGAAACCGGTGTCCTTGATGATCCTGTCATGCCCAAGATGCTTGGAAGGAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATAACACCTGCCCAAAGACTAGGCAACCTCTGGATCATCTGTCCTTAGCACCAAATTGTGCCTTAAAAAACTTGATTTCTGAATGGTGTGAGAGGAACAACTACCAACTACCTAAAAAATATTCAAGTCAAGAAAGTTGTTCAATTGAAAACAATGAGGAAATTCCATCTTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAAATACGTATGTTATCAAAAGAAAATCCTGAGAACAGAGTTTTGGTTGCTGACAGTGGAGGAATACCACCATTAGTGCAACTATTGTCCTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAAGCTTATATCTAAAGAAGGGGCAATTCCAGCTATTATAGAAGTGTTGGAGAATGGGAGTATTGTGGCTAAAGAAAATTCTGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATCAAAGAGATTGTGGGTCAATCAAATGGGTTTCCACCTTTGGTAGAATTGTTGAGGAGTGGGACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTCAACTTATCTCTCAACCATGCAAATAAAGGTAGGGCCATTGAAGCTGGCATTGTGCCACCTTTACTTCAATTGCTCAAAGACATGAACTTGGGCATGATTGATGAAGCACTCTCCATTTTGCTACTCCTTGTATCAAATTCAGAAGGAAGGCAAGAGATTGGACAACTATCCTTCATTGAAACCCTTGTTGGGTTCATCCGAGAAGGGAGCCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGTTCAAGTAACTCATCCTTTATATTGGCAGCACTTCAATTTGGAGTGTATGAGCATTTAATTGAGATCAAAGAAAGTGGAACAAATAGAGCACAAAGGAAAGCAAATGCAATCTTAGAGCTTGTAAGCAGGAGCGAGCAAATTTAA 1926 0.4242 METEGEREGGGGDGEQNESDESTRPDEEELVEEIQQVIESVVQFGEYRRTQRKEAHNLARRFKLMLPLMEDLRDLQQPVPQNGVAWLIKLRDALLSAKDLLRLCSQGSKIHLALEGEAVMIKFQSVYEKLSQAFDGVPGDELGISDEVREQLELMHVQLRRGKRRTDTQDIELAMDMIVVFSDEDGRNADRAIVERLGKKLELHSVEDLEVETMAVKNLATERKGQQVESTQRIIDLLNKFKRVAGMEETGVLDDPVMPKMLGRSTSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFKSNHNTCPKTRQPLDHLSLAPNCALKNLISEWCERNNYQLPKKYSSQESCSIENNEEIPSLVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVADSGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLENGSIVAKENSAATLFSLSMLDEIKEIVGQSNGFPPLVELLRSGTVRGKKDAATALFNLSLNHANKGRAIEAGIVPPLLQLLKDMNLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVGFIREGSPKNKECAASVLLELCSSNSSFILAALQFGVYEHLIEIKESGTNRAQRKANAILELVSRSEQI. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00931 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Seca1g00931 641 Coils Coil 636 641 - -
Seca1g00931 641 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Seca1g00931 641 FunFam RING-type E3 ubiquitin transferase 27 140 - -
Seca1g00931 641 Gene3D - 27 138 IPR036537 GO:0007166
Seca1g00931 641 Gene3D - 347 462 IPR011989 -
Seca1g00931 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Seca1g00931 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 484 526 IPR000225 GO:0005515
Seca1g00931 641 SMART arm_5 555 595 IPR000225 GO:0005515
Seca1g00931 641 SMART arm_5 473 513 IPR000225 GO:0005515
Seca1g00931 641 SMART arm_5 432 472 IPR000225 GO:0005515
Seca1g00931 641 SMART arm_5 514 554 IPR000225 GO:0005515
Seca1g00931 641 SMART arm_5 391 431 IPR000225 GO:0005515
Seca1g00931 641 CDD RING-Ubox_PUB 271 323 IPR045210 -
Seca1g00931 641 MobiDBLite consensus disorder prediction 1 19 - -
Seca1g00931 641 SUPERFAMILY ARM repeat 359 636 IPR016024 -
Seca1g00931 641 SUPERFAMILY RING/U-box 269 346 - -
Seca1g00931 641 PANTHER U BOX DOMAIN-CONTAINING 52 635 - -
Seca1g00931 641 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Seca1g00931 641 Gene3D - 463 639 IPR011989 -
Seca1g00931 641 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Seca1g00931 641 Pfam Armadillo/beta-catenin-like repeat 475 512 IPR000225 GO:0005515
Seca1g00931 641 Pfam Armadillo/beta-catenin-like repeat 391 430 IPR000225 GO:0005515
Seca1g00931 641 Pfam Armadillo/beta-catenin-like repeat 516 549 IPR000225 GO:0005515
Seca1g00931 641 FunFam RING-type E3 ubiquitin transferase 266 343 - -
Seca1g00931 641 FunFam RING-type E3 ubiquitin transferase 346 641 - -
Seca1g00931 641 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00931 Seca-Chr1 12896647 12899987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00931 30 641 U-box Gene Family AT5G42340 64.052 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00931 - - gmx:100777362 1029.24