Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00930 ATGAAGAAAGTTGACTTTATGGGTTTAACTGAAGATGTCATGAGGATGTATCATTTTCGCACTCGTGTGGTGGCATTCAACTTCTACAATACTTATGCTGAAAAGAAAGGATTTGCAGCCAGAAGGTCTAATACTGTTTTAAATAAGAGACGCGAGGTCACTCAACAAACATTTGTCTGCTTCAAGCAAGGATATCGTGAGAAGAAACATTTGGAGAGGCGTATACGAAAAAGGGAACCGAGGTCAATGACTCGGTGTGGTTGTTTTGCTTTCTTTCGAGTAAGGTTTGTAGCAGATACTGGGTGTTGGCATGTAAAAGCAGTTTGTGATGAACACAACCATGAAATGTTGGCGCAGAGATTTGTTGGAATGTTGCCTGCACATCGAAAGATGGATGATTGTGAAGTAATGCAGATGAATAGTATGAGAGATGTTGGTATTGGAGTGACACAGATTTATGGTTTAGCTGCAAACCAATCTGGTGGTTTTGAGAGGTTGGGGTTTAGGAAAAGAGATATGTATAATGAAGTAGAAAAACAAAGGCGTATGCAAGTTAGTGATGTCAGATCTGCTTTTGCTTATCTCCGAGAACTGCGATCAGGTGACCCCGACATGTTTTGGAGACGCACTATTGATGGAGAAGGTAGACTTGAGCATTTATTTTGGTGTGATGGTAGGAGTCGGGAAGATTACAATGTTTTTGGTGATGTTGTTGCGTTTGATGAAACATACAGGAGAAACAAATATATGTCCCCGTTGGTTGTATTTGCTGGTGTTAACCATCATAATCAAACTATTGTGTTTGGTAGTGCTTTAGTTGCTAATGAAACGGAAGAGACTTATGTTTGGTTACTAAAGCAATTTGCAGAAGCAATGAATGGAAAGTTACCAACGTCAATAATCACTGGTGGAGACCTTGCAATGCGGAATGCTATTAGATCTGTGTTTCCAAATGCACATCATAGATTATGTGCATGGCACCTATTAAGGAATGCCACGAAAAACATTAGTAATCCACAGTTCACAATGAAGTTCAGGCGCTGCATGCTTGGTGACTATGATGTTGGTAGGTTTCGGTTGAAATGGGAGGAGTTAGTTTCGGAGTTTGATTTGCAGTCCAACCAATGGGTCACAGAATTGTATGAGAAGCGGAAAATGTGGGCTGCAATACACATTCGTGGTAATTTCTTTGCTGGTTTTCGTACAACATCAAGGTGTGAGGGAATGCACTCTCAGGTTGGGAGGTATGTCCACTATCGTAATAACTTGACTGAATTTCTTAAACATTTCTCTTGGTATTTGGCTTATATTAGGCAAAAGGAAGTGGAGGGTGATTTTGAATCAATAATTGGTGAGCCTGTGTTACAAACTTCATTTCAAGACATTGAGAGATGTGCAGCCAGTTACTATACGAAGAAGGTATTCTTGTTATTTAGGCCGATATTGGATAGGGCACGTGGACTAAAGGTGGTTGAGTGTGCATTGATGGTTGTGCATCTAGTACAATTAGAACAAGAAATTAAGCTGAAATACAACATTGAAGGGAAATTAACACCATTACATAAAATCATAACGACATAG 1581 0.3972 MKKVDFMGLTEDVMRMYHFRTRVVAFNFYNTYAEKKGFAARRSNTVLNKRREVTQQTFVCFKQGYREKKHLERRIRKREPRSMTRCGCFAFFRVRFVADTGCWHVKAVCDEHNHEMLAQRFVGMLPAHRKMDDCEVMQMNSMRDVGIGVTQIYGLAANQSGGFERLGFRKRDMYNEVEKQRRMQVSDVRSAFAYLRELRSGDPDMFWRRTIDGEGRLEHLFWCDGRSREDYNVFGDVVAFDETYRRNKYMSPLVVFAGVNHHNQTIVFGSALVANETEETYVWLLKQFAEAMNGKLPTSIITGGDLAMRNAIRSVFPNAHHRLCAWHLLRNATKNISNPQFTMKFRRCMLGDYDVGRFRLKWEELVSEFDLQSNQWVTELYEKRKMWAAIHIRGNFFAGFRTTSRCEGMHSQVGRYVHYRNNLTEFLKHFSWYLAYIRQKEVEGDFESIIGEPVLQTSFQDIERCAASYYTKKVFLLFRPILDRARGLKVVECALMVVHLVQLEQEIKLKYNIEGKLTPLHKIITT. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00930 526 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 481 IPR031052 GO:0006355
Seca1g00930 526 Pfam MULE transposase domain 237 331 IPR018289 -
Seca1g00930 526 Pfam FAR1 DNA-binding domain 27 117 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00930 Seca-Chr1 12885520 12887100 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g00930 MULE 3.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00930 - - mtr:120580664 573.548