Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00917 ATGTCAATCTTCGATGGAGCTTTCATGGACACACAACTCTCCAAACACACCTCAATCTTCGGTCTCCGTCTCTGGGTTGTCATTGGAATCCTCATCGGCGCTCTCATAGTCTTCACCCTCTTCCTCCTCTCTCTCTGCCTTGTCTCTCGCCGGCGCAACCGCCGCTCCAGCCCCGTCGACTACAAGCTTGCCGGAGACCCTCTTCCGTCCAAGGAAATCCAGGAGATCGTGCACCTTCCGGGACCCCACATGCTCCGGAGACCGGCGCCGGGGAAGGTGCCAGAGATCCACGTGGACATAGGCAAGGCAGAGCACAGGGTGGTGGTGCAGTCTGATAGGGTTTCCAGTGGAGAGAGCAAGGGAACAGGGGTGAGTGGGTGTGAAACGACGTCGTCGTTTGGGAGTGTCATTGTTGGTGGGATTGGACCTGAGGTGTCGCATCTTGGGTGGGGTAGATGGTACACTTTGAGGGAGCTTGAGGATGCTACTGGTGGGTTGTGTGAGGAAAATGTGATTGGTGAAGGTGGTTATGGGATTGTGTATCAAGGGGTGCTCAGTGATGGTACCAAGGTTGCTGTCAAGAACCTGTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTAGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTAGAACAGTGGCTACATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGGATATACGCATGAACATTATTTTGGGAACTGCAAGAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCACAGAGATGTGAAATCAAGCAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGAAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCCCTTAAACGTGCCTTGTTGATTGCCCTTCGGTGTGTTGATCCTGATGCAACAAAAAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGTAGATGACCTGTTATTCAGTAATGAACGTAGAACTGGGGGAGAATCTTCACGTTCCCATCATGATTATCAACCAGAGCATAAGGACTCAAACTTAGATAAGAGGACAGATGGAGGGATCATTGATCAAAGTGAAGATAGTGGTAGAAATCATCAGCAATCCAATAGGTGGAGATGA 1491 0.4735 MSIFDGAFMDTQLSKHTSIFGLRLWVVIGILIGALIVFTLFLLSLCLVSRRRNRRSSPVDYKLAGDPLPSKEIQEIVHLPGPHMLRRPAPGKVPEIHVDIGKAEHRVVVQSDRVSSGESKGTGVSGCETTSSFGSVIVGGIGPEVSHLGWGRWYTLRELEDATGGLCEENVIGEGGYGIVYQGVLSDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWDIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEVDDLLFSNERRTGGESSRSHHDYQPEHKDSNLDKRTDGGIIDQSEDSGRNHQQSNRWR. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00917 496 SUPERFAMILY Protein kinase-like (PK-like) 146 439 IPR011009 -
Seca1g00917 496 SMART serkin_6 166 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00917 496 ProSiteProfiles Protein kinase domain profile. 166 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00917 496 MobiDBLite consensus disorder prediction 448 496 - -
Seca1g00917 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Seca1g00917 496 CDD STKc_IRAK 172 438 - -
Seca1g00917 496 PANTHER OS01G0323000 PROTEIN 8 459 - -
Seca1g00917 496 FunFam Putative receptor-like serine/threonine-protein kinase 242 452 - -
Seca1g00917 496 FunFam Probable serine/threonine-protein kinase At1g01540 146 241 - -
Seca1g00917 496 Gene3D Transferase(Phosphotransferase) domain 1 242 448 - -
Seca1g00917 496 ProSitePatterns Protein kinases ATP-binding region signature. 172 194 IPR017441 GO:0005524
Seca1g00917 496 Gene3D Phosphorylase Kinase; domain 1 150 241 - -
Seca1g00917 496 Pfam Protein kinase domain 169 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00917 Seca-Chr1 12678117 12682258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00917 138 439 Receptor kinase-like Gene Family AT4G02010 47.059 3.92e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca1g00917 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00917 - - gmx:100800724 786.949