Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00913 ATGGCCACCACTCATTCGCTTCTACACTCATATGGGTCCTCCTTTCTAGCTCAATTTCGTACCTTTCCACCTCAAATGTCTTCTTCAGTGCTCCATCATGGAAACAGGCATGGAAATGCAGTGGTGTTCGTGAAGGCCACAGCTGCTGGGGCTGTGCTGGTAGAGAAGTCTGAGGTTGAGAAGGTTAATAGGCTCAAACAAACCTACAATGAGAAAATTGTTCCCTTACTCATGGAAGAGTTCTCTTACACCAGCATACGCCGGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGCGGTATTGGAGATGCTGCACAAAATGCAAAAGATTTGGAAGCGGCAATTAGTGATCTAGCATTAATCACTGGGCAGAGACCTGTTAAGACTCGGGTCAGGGCTTCCGTTGCCACCTTTAAGATCAGGGAAGGTCAACCTCTTTGGATTGCTGTGACACTTAGAGGAAGTATGATGTACTCATTCCTAGACCGAGTTGTCAAATTGGAACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACTCAAACAACTTTGATGGGAATGGGATTTTCAACATTGGCATTAAGGAACAGGGTGTGTTCCCAGAGATTAGAGCTGATGTTATTGGTAAGCCAAGGGGAATGGATATTTGCATCACAACAACAACTAAAACTGATCAAGAAGCATAG 684 0.4444 MATTHSLLHSYGSSFLAQFRTFPPQMSSSVLHHGNRHGNAVVFVKATAAGAVLVEKSEVEKVNRLKQTYNEKIVPLLMEEFSYTSIRRVPKIEKIVVNCGIGDAAQNAKDLEAAISDLALITGQRPVKTRVRASVATFKIREGQPLWIAVTLRGSMMYSFLDRVVKLELPRTRDFQGVNSNNFDGNGIFNIGIKEQGVFPEIRADVIGKPRGMDICITTTTKTDQEA. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00913 227 Pfam Ribosomal protein L5 88 141 IPR031310 -
Seca1g00913 227 Hamap 50S ribosomal protein L5 [rplE]. 62 227 IPR020930 GO:0003735|GO:0005840|GO:0006412
Seca1g00913 227 Pfam ribosomal L5P family C-terminus 149 227 IPR031309 -
Seca1g00913 227 SUPERFAMILY RL5-like 64 227 IPR022803 -
Seca1g00913 227 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 61 225 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca1g00913 227 Gene3D - 56 227 IPR022803 -
Seca1g00913 227 FunFam 50S ribosomal protein L5 61 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00913 Seca-Chr1 12648621 12651632 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00913 91 196 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 30.275 1.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00913 K02931 - gmx:100800193 339.732