Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00910 ATGGCCACCACTCCTTCGCTTCTACACTCATCTGGGTCCTCTTTTCTAGCTCAATTTCGTACCTTTCCACCTCAATTGTCTTCTTCAGTGCTCCTTCATGGAAACAGGCATGGAAGTGCAGTGGTGTCCGTGAAGGCCACAGCTGCTGGGGCTGTGCTGGTGGAGAAGTCTGAGGCTGAGAAGGTCAATAGGCTCAAACAAACCTACAATGAGAAAATTGTTCCCTTGCTCACGGAAGAGTTCTCTTACACCAACATACACCAGGTTTTGCGAAAATTTTTGCAATGTTGGTCGTTTCAGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGTGGTATTGGAGATGCTGCACAAAATGCAAAAGGTTTGGAAGCTGCAATTAGTGATCTAGCATTAATCACTGGGCAGAGACCTGTTAAGACTCGGGCCAGGGCTTCCGTTGCCACCTTCAAAATCAGGGAAGGTCAACCTCTTGGGATTGCCGTGACACTTAGAGGAAGTATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTTTGAACACCAACAGCTTTGATGGTAATGGGAATTTCAACATTGGCATTAAGGACCAGGGTGTGTTCCCAGAGATTAGAGCTGATGTTATTGGTAAGCCAAGGGGAATGGATATCTGCATCACAACAACAGCTAAAACTGATCAAGAAGCACAAAGATTATTGGCTCTTATGGGTATGCCATTCAGAGAGGGAGGTGGTCCTGCTGCTGCCACAGCTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGAGAAATCAAAGGGAAAAGGAAAGAGGTAA 843 0.4543 MATTPSLLHSSGSSFLAQFRTFPPQLSSSVLLHGNRHGSAVVSVKATAAGAVLVEKSEAEKVNRLKQTYNEKIVPLLTEEFSYTNIHQVLRKFLQCWSFQVPKIEKIVVNCGIGDAAQNAKGLEAAISDLALITGQRPVKTRARASVATFKIREGQPLGIAVTLRGSMMYSFLDRVVNLGLPRTRDFQGLNTNSFDGNGNFNIGIKDQGVFPEIRADVIGKPRGMDICITTTAKTDQEAQRLLALMGMPFREGGGPAAATARKKKLKSHHFEKSKGKGKR. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00910 280 FunFam 50S ribosomal protein L5 62 252 - -
Seca1g00910 280 SUPERFAMILY RL5-like 64 251 IPR022803 -
Seca1g00910 280 Pfam Ribosomal protein L5 100 153 IPR031310 -
Seca1g00910 280 Pfam ribosomal L5P family C-terminus 157 250 IPR031309 -
Seca1g00910 280 ProSitePatterns Ribosomal protein L5 signature. 130 146 IPR020929 GO:0003735|GO:0005840|GO:0006412
Seca1g00910 280 MobiDBLite consensus disorder prediction 253 280 - -
Seca1g00910 280 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 66 253 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca1g00910 280 Hamap 50S ribosomal protein L5 [rplE]. 62 252 IPR020930 GO:0003735|GO:0005840|GO:0006412
Seca1g00910 280 Gene3D - 56 252 IPR022803 -
Seca1g00910 280 MobiDBLite consensus disorder prediction 262 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00910 Seca-Chr1 12614798 12617234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00910 103 208 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 30.189 3.37e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00910 K02931 - gmx:100818896 426.787