Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00906 ATGGTGTCCCTCAACCCAAACCCACCTCAACCTTTTCACTTCTTTGACCCCATCAACATGGAGGATCTGAATAAGAAGATCCGAAAACCCTATACCATTACCAAGTCCAGGGAGAGCTGGACTGACCAGGAGCACGACAAGTTTCTTGAAGCTCTTCAGCTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCAAAAACAGTCATCCAGATAAGGAGTCATGCGCAGAAGTATTTTCTGAAAGTTCAGAAGAACGGAACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTCCTAAAAATGCTCCTACTGTGTCCCAAGTTACCGGGCCTTTGCAATCTTCATCTACATTCACTGAGCCATCATACATTTATAGGCCAGATTCGTCATCCATGCTTAGAACTCCAATTAGCAGTGTGCCACTGTCGTCTTGGAGTTATAATGTTATGCCACAAGTCAGTCTACCAGGAGTGACAAAAGAGTCAAATGATATGGGGTTGACTCCACAAGCCATTCCTACCAATTACTGCTATAGCAGTAGTACTGAGAGTACTCCAAGGGCTTGGCCAAGTAGCAAACAGACAGATCAAGGTGACCAAGGCAAGCCAATTGAAGCAATGCCCAATTTTGCACAAGTCTACAGCTTCATTGGCGGTTTGTTTGATCCAAATGCAACTAATCATCTACTGAAGCTGAAACAGATGAACCCATTAAATATGGAAACCGTATTGCTATTGATGAAAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGAACCATAAGAGATTGCTGTCATCGTATGATGCTGGTTCAGAAAAGGCAATGCCTGGTAGTCAATACAGCAAATCCCTCACTGATAAATCAGAGAGTGCTGTTCTATCTGCTAAGGGTGTTACCAGTGGTTTCTCCTGA 957 0.4326 MVSLNPNPPQPFHFFDPINMEDLNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPTVSQVTGPLQSSSTFTEPSYIYRPDSSSMLRTPISSVPLSSWSYNVMPQVSLPGVTKESNDMGLTPQAIPTNYCYSSSTESTPRAWPSSKQTDQGDQGKPIEAMPNFAQVYSFIGGLFDPNATNHLLKLKQMNPLNMETVLLLMKNLSINLMSPEFENHKRLLSSYDAGSEKAMPGSQYSKSLTDKSESAVLSAKGVTSGFS. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00906 318 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Seca1g00906 318 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Seca1g00906 318 MobiDBLite consensus disorder prediction 285 318 - -
Seca1g00906 318 MobiDBLite consensus disorder prediction 291 318 - -
Seca1g00906 318 MobiDBLite consensus disorder prediction 113 127 - -
Seca1g00906 318 MobiDBLite consensus disorder prediction 86 127 - -
Seca1g00906 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Seca1g00906 318 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Seca1g00906 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Seca1g00906 318 PANTHER SWI/SNF COMPLEX-RELATED 20 268 - -
Seca1g00906 318 CDD SANT 39 82 IPR001005 -
Seca1g00906 318 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Seca1g00906 318 Gene3D - 40 87 - -
Seca1g00906 318 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Seca1g00906 318 SMART sant 36 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00906 Seca-Chr1 12548287 12553158 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g00906 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00906 - - gmx:778090 454.521