Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00899 ATGGAGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCAACTCTTCCACCGTTACCTCCACCACCACCACCACAGCATCCTCTGTGTCTTCTTCTTCCTCTTCCCCTGGTTTTGGCTCTTGTTACTTGCATCAACCTGAAGCTAATTCATGTGGGTTCTCTATCTTTGATGGTGCACAACAACAAGGTCAACTTTTGTCAATTCCTGCATACCCCTTTGAAGCAAGGGGTTCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTTCCAAATCACAGCCTCCTCTGATCTCATTGCAAGCCTCTCCCTTGTCCCCATTCTCTTATTCTTCCTCTGCAACACCAAAATCAGCTCAGACACAAGAGAAACAGCAGCAGCGGAGTAAACAGCCTCATTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAGAGTTTGTCAAGTACCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAAGGGTCACCTTATCCAAGGGGATACTATAGATGTAGCAGCTCAAAAGGGTGTTTAGCAAGGAAACAAGTTGAGAGAAACAGATCAGACCCAACAATGTTCATAGTCACCTATACAGCTGAACACAACCACCCTGCTCCTACTCACCGAAATTCTCTTGCTGGTTCCACACGCCAGAAGCCATTGACACCTCAAACTGGCACCACCAATGAAGATTCTGATAAGGCACTGACAAAACCCACTTCCCCTGCAACCTCAGGGGCAGAGGAAGAGGTTCCAATTCAGGGAGAGAAGTCAGAGAGCAGAGAAGAGAAGGAAGATGTGATGGATGATGAGGAAGAAGATGAATTTGGGTTATCTGATATGGTGTTAACAGATGATTTCTTTGAGAGTTTAGATGAACTGAGTCAACTCACTGGCTCTTCTGTAGTTACTGGAGATTGCTTCACTGATCCCTTTTCTGCTATTGCAATCCCTTCTTGGGTGACCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1044 0.4617 MEEDWDLHAVVRGCNSSTVTSTTTTTASSVSSSSSSPGFGSCYLHQPEANSCGFSIFDGAQQQGQLLSIPAYPFEARGSIEELHELCKPFFSKSQPPLISLQASPLSPFSYSSSATPKSAQTQEKQQQRSKQPHSVTTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQTGTTNEDSDKALTKPTSPATSGAEEEVPIQGEKSESREEKEDVMDDEEEDEFGLSDMVLTDDFFESLDELSQLTGSSVVTGDCFTDPFSAIAIPSWVTNSAATAAGGS. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00899 347 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00899 347 MobiDBLite consensus disorder prediction 218 259 - -
Seca1g00899 347 FunFam WRKY transcription factor 22 144 214 - -
Seca1g00899 347 MobiDBLite consensus disorder prediction 110 152 - -
Seca1g00899 347 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00899 347 SUPERFAMILY WRKY DNA-binding domain 158 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00899 347 MobiDBLite consensus disorder prediction 110 135 - -
Seca1g00899 347 MobiDBLite consensus disorder prediction 215 293 - -
Seca1g00899 347 Gene3D WRKY domain 144 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00899 347 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00899 347 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 312 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00899 Seca-Chr1 11778863 11780564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00899 1 346 WRKY Transcription Factor Family AT4G01250 46.348 2.70e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00899 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00899 K13425 - gmx:100798084 512.301