Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00894 ATGGGAGACCCAATTGAAAGCCAAGACCCACCACCACCACCATTAATGCTACCGCCCCAAAACAACAACAACAACACTCCTCCTCCCTTTCTCTTTACGCCTCCTTTGATGGTGCAAAACCCTTTGGATCCTCAAGATGATCATGGCTTGGCTGATATTGATTGGGGTAACCTCTTTTGTGGCCAAAATAATAATAACAACAACTTGCTTCTTGTTGGGGATGCAAAGGAAACAATAATGGATCAATGCGCTTCTTCATCTTCTAATTTCATGAATGAAAATGGAGCCCATCATCATCGAGAAGAGGAGAAGGGAAACAAGGAGAAAAGAAAAGGTGGGAGAATGAAGAAGACAACAAGAGTGCCAAGGTTTGCCTTTCAAACAAGAAGTGTTGATGATATTTTGGATGATGGTTATCGCTGGAGGAAATATGGACAGAAAGCTGTGAAGAATAGCACATATCCCAGAAGCTACTACCGGTGCACGCATCACACATGCAACGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATTGTGGTGACGACTTATGAGGGAATTCACAACCACCCATGCGAGAAGCTCATGGAAACCCTAACCCCTCTTCTCAAGCAAATACAGTTTCTTGCTAGCCTGTAA 645 0.4357 MGDPIESQDPPPPPLMLPPQNNNNNTPPPFLFTPPLMVQNPLDPQDDHGLADIDWGNLFCGQNNNNNNLLLVGDAKETIMDQCASSSSNFMNENGAHHHREEEKGNKEKRKGGRMKKTTRVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00894 214 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00894 214 Pfam WRKY DNA -binding domain 136 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00894 214 MobiDBLite consensus disorder prediction 1 31 - -
Seca1g00894 214 Gene3D WRKY domain 120 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00894 214 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 196 IPR044810 GO:0003700
Seca1g00894 214 SMART WRKY_cls 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00894 214 MobiDBLite consensus disorder prediction 94 109 - -
Seca1g00894 214 SUPERFAMILY WRKY DNA-binding domain 129 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00894 214 MobiDBLite consensus disorder prediction 89 117 - -
Seca1g00894 214 FunFam WRKY transcription factor 57 121 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00894 Seca-Chr1 11741987 11743937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00894 108 214 WRKY Transcription Factor Family AT5G41570 72.897 2.05e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00894 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00894 - - gmx:100796481 272.322