Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00890 ATGTCCTCTCCACACACCTATTTCGCCAACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTCGCTTTTCTCGTTCTTCTCTCTACCCTCATCCTCTCCTCTTACCTCTGTTGCCGTTCCCACCGCAACAACCCCACCAACACCCACAACCCCAACACCACCAACGACGGCGTCGTTTTGCCACGTGTCATCTTCGTGGCGGAAGACGATGAAGACGAGCAACGCGGCGAAGAAAACGCCGCCGTGGGTCTTGACCAGAATGTCATAAACTCTTACCCCAGGTTCCAGTTTAGCAGGGAAAACAACAACGCTGTTGGACAGAACAACACAACGTGTTCAATTTGTTTGTGTGAGTACAAGGATTCTGAGATGCTGAGGATGATGCCTGAGTGTCGACATTATTTCCACCTTTGTTGCCTTGATTCGTGGTTGAAGCTTAATGGGTCGTGCCCTGTTTGTCGAAACTCACCCCTCCCAACGCCGCTTTCTACGCCGCTTCAAGAGGTGGTGCCGCTTTCTCAGTATGCAGCTGATAGAAGAAGAAGGTGA 549 0.5155 MSSPHTYFANLGLGYSIAIALAFLVLLSTLILSSYLCCRSHRNNPTNTHNPNTTNDGVVLPRVIFVAEDDEDEQRGEENAAVGLDQNVINSYPRFQFSRENNNAVGQNNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRR. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00890 182 SMART ring_2 112 153 IPR001841 -
Seca1g00890 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 158 IPR013083 -
Seca1g00890 182 SUPERFAMILY RING/U-box 103 158 - -
Seca1g00890 182 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Seca1g00890 182 Pfam Ring finger domain 111 154 IPR001841 -
Seca1g00890 182 PANTHER RING-H2 FINGER PROTEIN ATL67 5 182 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00890 Seca-Chr1 11698078 11698626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00890 9 173 C3H Transcription Factor Family AT5G07040 41.212 3.61e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00890 - - lja:Lj1g3v2807930.1 295.049