Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00889 ATGTCCCCTACCAATTCTTCATCATCCCCACCCATCATGACTATCATCGATAACCTAGACACATTCACTAGGTTGTTCCTCTTAATTATCTTTCTTGCCCTCTTCATTCGAGTATGTTACGTTTACTTTTTCTCCTACCGTGGCCACAATCGTAACGACACATCAACACAACAAGGCAATGATAAAAACACCACCATGGGGCTCCCTATTGATGTCATCAATTCTTATCACACTTTCCCTTACACCAAAGACAACATTGCCACCATTAATTTTGACCATGACACCACATGTTGCATATGTATTTCAGATTATATGGAATCGGAGATGTTGAGGATGATGCCGCAATGTCATCACTATTTTCATCGAGATTGTGTTGATACATGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTAGGAATTCGCCAATGTTGGAAGGTAGTAATGTGTCTAACTTAGATTGCGTCTAA 468 0.4038 MSPTNSSSSPPIMTIIDNLDTFTRLFLLIIFLALFIRVCYVYFFSYRGHNRNDTSTQQGNDKNTTMGLPIDVINSYHTFPYTKDNIATINFDHDTTCCICISDYMESEMLRMMPQCHHYFHRDCVDTWLKVNGSCPICRNSPMLEGSNVSNLDCV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00889 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 143 IPR013083 -
Seca1g00889 155 SMART ring_2 97 138 IPR001841 -
Seca1g00889 155 SUPERFAMILY RING/U-box 89 142 - -
Seca1g00889 155 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Seca1g00889 155 PANTHER RING-H2 FINGER PROTEIN ATL67 53 143 IPR044289 GO:0016567|GO:0016740
Seca1g00889 155 Pfam Ring finger domain 96 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00889 Seca-Chr1 11678025 11678492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00889 36 142 C3H Transcription Factor Family AT2G46495 37.383 5.80e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00889 - - ccaj:109814695 178.718