Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00887 ATGTCTGGAACATCCATGGCCACCCCTCATGTGGCTGGAGTTGTTGGTCTTCTCAAGACACTACACCCAAACTGGAGTCCAGCAGCTATCAAATCTGCAATAATGACAGCTGGTGAGATCTTTAGAATTATTTATGATGATGCTATTGGTATGGTAACACCATATGACTATGGCTCTGGACACATCACACCAAATTGGGCAATGGATCCTGGCTTGGTATATGACTTAACAGCCACTGATTACCTAAACATGCTTTGTGCATGTGGTTATAACCAAAGTCCTTATGTGGTCAAAATCCTGGACTTCAACTACCCTGCAATAGTAATACCAAAACTCTGGCACAGTTGCTTTGACCAGGAGGGTTAA 366 0.4317 MSGTSMATPHVAGVVGLLKTLHPNWSPAAIKSAIMTAGEIFRIIYDDAIGMVTPYDYGSGHITPNWAMDPGLVYDLTATDYLNMLCACGYNQSPYVVKILDFNYPAIVIPKLWHSCFDQEG. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00887 121 Pfam Subtilase family 1 38 IPR000209 GO:0006508|GO:0008236
Seca1g00887 121 SUPERFAMILY Subtilisin-like 1 74 IPR036852 GO:0004252|GO:0006508
Seca1g00887 121 ProSitePatterns Serine proteases, subtilase family, serine active site. 3 13 IPR023828 -
Seca1g00887 121 Gene3D Peptidase S8/S53 domain 1 81 IPR036852 GO:0004252|GO:0006508
Seca1g00887 121 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 108 IPR045051 -
Seca1g00887 121 ProSiteProfiles Serine proteases, subtilase domain profile. 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00887 Seca-Chr1 11671536 11672069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00887 2 112 Subtilisin-like Serine Gene Family AT5G59810 51.562 5.72e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00887 - - pvu:PHAVU_003G089100g 145.591