LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00884	ATGGAGTTTCACTACCATCATTACATCCTCTCCACAATCCTTCTCCTGTGTATGTTTCCACAATCAGTCCATTCTCAACAAGTATACCTCAATAGCACTGTCTATGACTGCTCTAACAACCCTTCTTCACCAAAAGGATACCTTTGCAATGGCCTTCAAAAATCATGCACTTCCTTTTTAGTTTTCAGGTCAAAACCTCCCTATGATAACCCTGTAAGCATTGCCTACCTTCTTGGCTCTGAAGCATCTTCCATAGCCTCAATCAACAAGATCTCAACAAATGACAAGATTCCTCCCAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTTCTGGAAATATCTACCAGCATAGCACACCTTACACTGTTAGCAAGAATGACACTTACTATGAGTTGGTAAAAGAGACTTACCAAGGCCTCACAACATGTCAAGCTTTGATGGGTCAGAATTACTATGCTTCTGCCAACATTGCAGTTGGTGCTGAACTCACAGTTCCTATGTTATGTGCTTGTCCCTCTGAAAACCTGACAGCAAAAGGAGTGAGCTCCTTGCTGGTTTACTTGGTGAACTATGGTGACACGGTTAAGTCTATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGAGAGAGGCTAATGAGTTGCCAGTGCCACCAAATGCAAACAGTAGCATCATGCTCTCTGCCTTGACGCCTATCTTAGTTCCTCTGAGTGGCAAGAGTTGCAAAGAGAATCCAGATAAATTCTATTGCAAATGTTCCTTAGCACTGCATGCAGATGGAAGCTCCAAGGGACTCTTCTGTGATGAATCTCATGGTCAAAAATTCCCTGCCAAGTTGGTTGCTGCATTAGGTGTTGGAATTGGTGCTGCCTTTCTGTGTTTGTTTCTTTTGGGTTACAAGTCATATCAATACATGCAGAAAAAGAGAGAAAGTATTCATAAGGAAAAGCTGTTTAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTGTCATCTTATGGACATGGAGAAAAGGCAAAGCTTTTTACTGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACTATAGTAGCAGTGAAGAAATCAAAACAAATTGAAAGGAACCAGATTGAGACTTTTGTCAATGAAGTGGTTATTTTATCACAGATCAACCACAGGAACATTGTCAAACTCTTAGGTTGTTGTCTTGAAACAGAAACACCATTACTAGTCTATGAATTTATTCCCAATGGAACTCTATCCCAGCATATCCATAAGAAAGACCATGAGTCAACTCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCAGCTAGTGTTCCCATCTTCCATAGAGACATCAAACCCACCAACATACTCCTGGACAGTAACTACAGTGCCAAAGTGTCAGATTTTGGGACATCAAGATCAGTCCCACAAGATAAGACTCACTTAACCACAGCTGTAGGAGGTACTTTTGGATACATAGACCCTGAATATTTCCAGTCCAGTCAATTAACAGATAAGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACTGGGACAAAGCCCATTTCATTCTATGATGAAGATGAGGGTCAGAATCTGATTGCACATTTCATTTCTGTGATGAAGGAGAACCAACTTTCTCAGATTTTAGATGCTAAGGTGCTGAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGTTTGAGACTTAATGGAAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAATTAGAAGCATTGAGAAAGGTACAAAGTTCCTTACAAATCAACCATGATCATGAGTCACCAAATGATGGAAAATCATTTAAGCACACAAATAGTGACATAGTCCAAGAATCCAGAGAGGAAAGCATTCCATTAGTTAACAGGCAGGTCAAACTGAGGTTGGTGTTCTCCACTTGTATTCATGCCCTTGCACACATCATTTTGAATGGCCTCTCTTACAGAGGGCTGGGACTTCTCTAG	2112	0.4091	MEFHYHHYILSTILLLCMFPQSVHSQQVYLNSTVYDCSNNPSSPKGYLCNGLQKSCTSFLVFRSKPPYDNPVSIAYLLGSEASSIASINKISTNDKIPPNKSIIVPVFCSCSGNIYQHSTPYTVSKNDTYYELVKETYQGLTTCQALMGQNYYASANIAVGAELTVPMLCACPSENLTAKGVSSLLVYLVNYGDTVKSIGEAYGVDEQSMREANELPVPPNANSSIMLSALTPILVPLSGKSCKENPDKFYCKCSLALHADGSSKGLFCDESHGQKFPAKLVAALGVGIGAAFLCLFLLGYKSYQYMQKKRESIHKEKLFRQNGGYLLQEKLSSYGHGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKQIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHKKDHESTLPWDSRLRIACEVAGAVAYMHFSASVPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSQLTDKSDVYSFGVVLVELITGTKPISFYDEDEGQNLIAHFISVMKENQLSQILDAKVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSSLQINHDHESPNDGKSFKHTNSDIVQESREESIPLVNRQVKLRLVFSTCIHALAHIILNGLSYRGLGLL.	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00884	703	SUPERFAMILY	Protein kinase-like (PK-like)	339	626	IPR011009	-
	Seca1g00884	703	CDD	STKc_IRAK	362	629	-	-
	Seca1g00884	703	Gene3D	Phosphorylase Kinase; domain 1	329	431	-	-
	Seca1g00884	703	SMART	LysM_2	121	167	IPR018392	-
	Seca1g00884	703	SMART	LysM_2	67	106	IPR018392	-
	Seca1g00884	703	SMART	LysM_2	187	237	IPR018392	-
	Seca1g00884	703	Coils	Coil	619	639	-	-
	Seca1g00884	703	ProSitePatterns	Protein kinases ATP-binding region signature.	362	385	IPR017441	GO:0005524
	Seca1g00884	703	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	122	637	IPR045274	GO:0007166
	Seca1g00884	703	FunFam	Wall-associated receptor kinase 2	327	431	-	-
	Seca1g00884	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Seca1g00884	703	Pfam	LysM domain	122	167	IPR018392	-
	Seca1g00884	703	Pfam	LysM domain	188	217	IPR018392	-
	Seca1g00884	703	FunFam	Wall-associated receptor kinase 2	432	648	-	-
	Seca1g00884	703	Pfam	Protein kinase domain	356	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00884	703	SMART	serkin_6	356	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00884	703	Gene3D	Transferase(Phosphotransferase) domain 1	432	653	-	-
	Seca1g00884	703	ProSiteProfiles	Protein kinase domain profile.	356	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00884	Seca-Chr1	11652297	11661352	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00884	276	630	Receptor kinase-like Gene Family	AT1G16130	57.263	5.65e-140	426

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Seca1g00884		Pkinase	4.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00884	-		-	gmx:100795455	1099.73