Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00878 ATGGTGGAAGATAAGTTAACACATGTAAGGAAACACACATCTGGTGCTTCCACTCATGTTTGCAAGCATTTTGTTGATGCATTGGATAAAATCAAGATGAACAAGAACAAGGACTTATTATTAACATTTATGCAAGATCCAGTCTCTCCTTTGGTCAACCACTTCCATAAACAACAGGTGTATAGCACAAAAATGAGATTGACCAGGTCTGTATCATTTCCTTTATCTGACTCATTATCAAAAAGAAGAGGTTTTGGGGCTATAGGCAATGGTTATCTTCAAAAAGGGAAAGGAAAGTCATGTTTTGGAAATAAAACACAAAAATCAGTTCAATTTGAATCCTCAAAAAATTTATGTGAAGAGGCCATGCCATCAGTAGCAAAATGGGGAGCAAATGGAAATTTTAATATAAATGAAGCAATAGTAAAAGATGTCAATTCTTCTTCAGGATCTGCTCAAGGTCAGAACCAGAAAGAAAGCAAACATGCTAAGAATCTCAAACAGAAAATAGAGCATGTAACTGGAGAGAGCAGAAAAGAAAAGCTTCGTGTTACAATGGATGCTGTCATTCATAAACTCCCCCAAGGCCATGGGATATCAGATGACTTGAAGAAGGAAGTTTTGAAGAAAATGACTGAACCTAATGTTACTAGAGAAGAAGAATATTGTTCTCCAAGTTGTAATGATAGTGATCCCTCTACTCATTCCTTTCCCAAGGATAAAAGGCACAGCATAAGAAGAAACTGGTCCCTTCAAGATTCACTAGAAAGTTATTGTCAACTCCATGAGAATAGCTTTAACACAGAAGCTAGTAACCCTCAATCTGAGCAACTAAAACTAAGAACAGAAAAAGCATGTTCACCATTGAGGAAGCAGATACCCTTTCAAAGGATTCTTTCATTACCTGATCTCCAATCTTTTATCTATGCTTATCAGATTGGGGAGATTTCTGATATTTTATCTCTCACTGAGCCAATCAAGGCTTCTGAGGATGGAACTATGAGTTCAGAGAGTATTGGTTATCAGAAAAAGAAGCTTGGCCTTAATGTGCAATCAAAAAGTCCATTGCAATTAGATACACCTCTGGAAAGTTTGAATCAAGGGAACCATGTTAGTGTAGGTGAAAATGATTTAGTGACTGGTGCTAATATTGTGGGATCAAGATCAGATTGTAGCAGTGAAATTAATGACAAGGTGAGCATGGTAATTGATGATTTTGGACACAGCAGTTTAAAAAACGATGGCACTTCCAATAACCAAGATATTGGGCCAATAAAAGAATACCAGGCTGCAATAGCTGCATCAGATTCAAAATCTAAGCCAGAATCTATTGATAGAGTGGATAATGTGGCTGAGCAACAAGAGGCTAATATGGATTCTCTTAAAGTGGCTGAGACCACAGGGAGTGCTCAAAAAGTGGAGATTCTAACCAAGCAATTGAATTATGAGATTCCTTATTTTCATGTGGACACCAGATCAGACAAAGCTGAGTTCAATTATGTGAAATATGTACTTGAGATATCTGGACTGACTGGTAATGATTGCCTTTCAGCATGGCATTCTAGTGACCAACCAATTGATCCATTACTTTATGAAGAAATGGAAGATGATCCTGATTTCTGTACTTATGAAGCTGGTCAGTGTAATCACCATGTATTGTTTGATTTAATTAATGAGACATTGTTGGAAATTTATGGGAAGTCTTACTGCTACAGTCCCCTACAATTGTCATATCTTCCCCACATTCATCCAATGTCAGTAGGGTGTCACATTCTCCATCAAGTGTGGACTCATATGAGCAAGTGCATGAGATCCAAACCTGGCCAAACAATAGATGATCATGTAGATAGAGATCTAACAAAGCATGATGAGTGGGTGAACCTTCAATTATGTGCTGAGTGTGTAGGTTTGGAGCTGGAAGACTTGATTTTCCATGATCTCCTAGAGGAAATAATGTGA 1959 0.3757 MVEDKLTHVRKHTSGASTHVCKHFVDALDKIKMNKNKDLLLTFMQDPVSPLVNHFHKQQVYSTKMRLTRSVSFPLSDSLSKRRGFGAIGNGYLQKGKGKSCFGNKTQKSVQFESSKNLCEEAMPSVAKWGANGNFNINEAIVKDVNSSSGSAQGQNQKESKHAKNLKQKIEHVTGESRKEKLRVTMDAVIHKLPQGHGISDDLKKEVLKKMTEPNVTREEEYCSPSCNDSDPSTHSFPKDKRHSIRRNWSLQDSLESYCQLHENSFNTEASNPQSEQLKLRTEKACSPLRKQIPFQRILSLPDLQSFIYAYQIGEISDILSLTEPIKASEDGTMSSESIGYQKKKLGLNVQSKSPLQLDTPLESLNQGNHVSVGENDLVTGANIVGSRSDCSSEINDKVSMVIDDFGHSSLKNDGTSNNQDIGPIKEYQAAIAASDSKSKPESIDRVDNVAEQQEANMDSLKVAETTGSAQKVEILTKQLNYEIPYFHVDTRSDKAEFNYVKYVLEISGLTGNDCLSAWHSSDQPIDPLLYEEMEDDPDFCTYEAGQCNHHVLFDLINETLLEIYGKSYCYSPLQLSYLPHIHPMSVGCHILHQVWTHMSKCMRSKPGQTIDDHVDRDLTKHDEWVNLQLCAECVGLELEDLIFHDLLEEIM. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00878 652 Pfam Domain of unknown function (DUF4378) 497 650 IPR025486 -
Seca1g00878 652 Pfam Protein of unknown function (DUF3741) 10 47 IPR022212 -
Seca1g00878 652 MobiDBLite consensus disorder prediction 146 178 - -
Seca1g00878 652 Coils Coil 444 464 - -
Seca1g00878 652 MobiDBLite consensus disorder prediction 219 240 - -
Seca1g00878 652 MobiDBLite consensus disorder prediction 219 233 - -
Seca1g00878 652 PANTHER PROTEIN TRM32 4 652 IPR044257 -
Seca1g00878 652 MobiDBLite consensus disorder prediction 160 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00878 Seca-Chr1 11469848 11475162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00878 477 644 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 45.856 2.08e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00878 - - gmx:121174644 750.355