Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00864 ATGTTCAAATTCTTGAAGGAGGTTGTTGGTGGATCTGGAACCGGCCTCAAGGAGCTCCCTTACACCATCGCCGAACCTTACCCTTCCGCTTGGGGCTCTTGGACTCATTATCGCGGCACCTCCAAGGACGATGGTTCTCCGGTCTCTATCTTCTCTCTTTCCGGTTCCAATGCTCAGGACGGACATTTAGCTGCTGCTCGCAACGGCGTCAAGCGTCTTCGAACTGTCAGGCATCCGAATATCTTGTCATTTCTTCACAGTGCCGAGATTGAAACTTATGATGCCGGTTCTCCCAAGGTCACAATCTATATTGTGACTGAACCTGTTATGCCGTTATCTGAAAAGATCAAAGAGTTAGGTCTTGAAGGTACACAAAGGGATGAGTATTATGCTTGGGGTCTGCATCAAATAGCTAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTGGTCACGCCAACTTTGGACTGGAAGCTCCATGCTTTTGATGTTCTATCAGAAATTAATGGGAGTAACGAAGCTTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAATTGGTAAAATCAGACTGGGATGCAATTAAGAAATCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGTCTGCATCTGGGCAAAACAGAGGAGTTACGCAACACTGTCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGGCTATTGAGTTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATACATTTTATGGAAATTCTCAGTTTGAAGGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCAGCTCTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTGCTTCCAACAATTGTAAAACTCTTTGCCTCCAATGACCGAGCTATTCGAGTTGGCCTTCTTCAGCATATTGATCAATATGGAGAGTCCTTATCAGCACAAACTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGCTAATTCTGGCTCCAAAGTTATCTCAAAGAACCATTTCAGGGTCATTATTGAAGCATCTGTCAAAGTTACAGGTTGATGAAGAGCCAGCAATTCGGACAAATACTACCATCTTGTTAGGCAATATTGGAAGCTACTTAAATGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACGCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGATAGTGATGTTAGAACGAAGGCATTTCAAGCTGTTGATCAGTTTTTGCAGATAGCAAAGCAATATTATGAAAAGACAAATGCAGCAGATACTACTGGGGGTGCAAGCATGGGAATCTCGTCAACTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACCTTGAAGGGCAAACCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCAGCTGCAATCACTCCAACATCATCTAATGGCAGCTCAGGTAATTTAGGTATAGAGATGCCATCAACAGCACCAGCCCGTGTAAGTCTAAGCTCTACAACTGATTTGGCTGGATACCCTGTCCCTACATCCCCTATGTCAACGGATGGCTGGGGAGAACTTGAGAATGGAAACCATCAAGAGCATGAAAGTGACAGGGATGGGTGGGATGATCTGGAACCACTTGAAGAGATAAAGCCAACTCCAGCTCTGGCAAACATTCAAGCAGCTCAAAGGCGGCCAGTCTCTCAACCTATTTTACAGACAAAACAATCAAGTTTGCTATCCAAAAGTACACCGACATTGAGCAAGGATGAGGATGATGATTTGTGGGGTTCTATAGCAGCTCCTGCTCCGAAAACATCAAGACCTTTAAATTTGAAATCAACTAGAACTGATGATGATGATCCCTGGGGTGCCATTGCTGCTCCAGCACCAACTACTAAGGCCAAGCCCTTACCGGCTGGCAGAGGTCGGGGAGCCAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATCAGGCATATGA 2400 0.4421 MFKFLKEVVGGSGTGLKELPYTIAEPYPSAWGSWTHYRGTSKDDGSPVSIFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEINGSNEASSGQMLQYAWLVGSQYKPMELVKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLHLGKTEELRNTVSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQTVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQYYEKTNAADTTGGASMGISSTPGNASLLGWAMSSLTLKGKPSDHAPVASVSSAAITPTSSNGSSGNLGIEMPSTAPARVSLSSTTDLAGYPVPTSPMSTDGWGELENGNHQEHESDRDGWDDLEPLEEIKPTPALANIQAAQRRPVSQPILQTKQSSLLSKSTPTLSKDEDDDLWGSIAAPAPKTSRPLNLKSTRTDDDDPWGAIAAPAPTTKAKPLPAGRGRGAKPAAPKLGAQRINRTSSGI. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00864 799 Gene3D - 282 560 IPR011989 -
Seca1g00864 799 Pfam Protein kinase domain 37 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00864 799 MobiDBLite consensus disorder prediction 596 627 - -
Seca1g00864 799 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00864 799 MobiDBLite consensus disorder prediction 696 719 - -
Seca1g00864 799 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Seca1g00864 799 MobiDBLite consensus disorder prediction 640 679 - -
Seca1g00864 799 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Seca1g00864 799 MobiDBLite consensus disorder prediction 694 799 - -
Seca1g00864 799 MobiDBLite consensus disorder prediction 661 679 - -
Seca1g00864 799 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00864 799 MobiDBLite consensus disorder prediction 604 627 - -
Seca1g00864 799 SUPERFAMILY Protein kinase-like (PK-like) 35 287 IPR011009 -
Seca1g00864 799 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Seca1g00864 799 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 10 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00864 Seca-Chr1 11200718 11211399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00864 70 291 MAP Kinase Kinase Kinase AT5G66850 24.786 5.64e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Seca1g00864 Pkinase 3.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00864 K08876 - gmx:100789813 1394.02