Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00855 ATGCCATCCATTTTCAGCAGTCTTGTCTCTGGAATTACCAATTCAGATTTATCTAAAAAGTGGCATATTTTGGGTGGAAAGCTAATTGAATTGGAATTTGTTTTCGGCACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTACCCACTCCGCCCAAATGAGCCTGAATGTGCATATTATTTAAGGACTGGACAGTGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAATAATATGGTGCTTTCAATGCGAAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAACAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCCTATATTGCCAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCATCCTTAATTGTACCTCAAGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAATGGTCAAATGGGATCAGACAGCTCACAGCAGACAATGGGAAATGATCAAACCTATGGAACTTCTCGCCAAGGTGAACCAGCAAATGCAGGATCCCAAGGGACTTATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTCTATGCATTGCAGAGGGAGAGCATATTTCCGGAGAGACCTGATCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGATTATTCCTGCTCCTGACTGTGTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATATCTGCATCACCTACAGCTGATGCCCCAGGACGGCGTCTGATGGGTTCTTCATCAGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAATCAGGCTCAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATGACATTGATGATGAGGGATAG 1101 0.4414 MPSIFSSLVSGITNSDLSKKWHILGGKLIELEFVFGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIASPRWQGPSSYASLIVPQGVVSVPGWSAYNGQMGSDSSQQTMGNDQTYGTSRQGEPANAGSQGTYSQFRSGSVPVGFYALQRESIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERIIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPTADAPGRRLMGSSSGTAALNLSSEGLVESGSAKPRRLSLSETRQIPSGDDDIDDEG. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00855 366 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Seca1g00855 366 SUPERFAMILY CCCH zinc finger 72 97 IPR036855 GO:0046872
Seca1g00855 366 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Seca1g00855 366 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Seca1g00855 366 SMART c3hfinal6 69 96 IPR000571 GO:0046872
Seca1g00855 366 SMART c3hfinal6 29 50 IPR000571 GO:0046872
Seca1g00855 366 MobiDBLite consensus disorder prediction 335 366 - -
Seca1g00855 366 FunFam CCCH type zinc finger protein 224 309 - -
Seca1g00855 366 ProSiteProfiles Zinc finger C3H1-type profile. 69 97 IPR000571 GO:0046872
Seca1g00855 366 SUPERFAMILY CCCH zinc finger 275 299 IPR036855 GO:0046872
Seca1g00855 366 SUPERFAMILY CCCH zinc finger 229 255 IPR036855 GO:0046872
Seca1g00855 366 ProSiteProfiles Zinc finger C3H1-type profile. 36 51 IPR000571 GO:0046872
Seca1g00855 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Seca1g00855 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 253 IPR000571 GO:0046872
Seca1g00855 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 50 IPR000571 GO:0046872
Seca1g00855 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Seca1g00855 366 Gene3D - 225 305 - -
Seca1g00855 366 Gene3D - 31 107 - -
Seca1g00855 366 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Seca1g00855 366 PANTHER PROTEIN PHOSPHATASE RELATED 36 318 - -
Seca1g00855 366 MobiDBLite consensus disorder prediction 168 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00855 Seca-Chr1 11063855 11070280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00855 24 364 C2H2 Transcription Factor Family AT3G02830 57.759 8.42e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g00855 zf-CCCH 4.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00855 - - gmx:100786261 666.766