Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00854 ATGATTGATTCATATTCCTCTATGGAATTCGATGCCGCAATTCGAGACCCTCTCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACAATGGAATCAGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACTGGCCTTTGTAGATTCGGAGCAACATGTCGATTTAATCATCCCCCTAACAGAAAACTGGCTATTGCCACAGCACGGATGAAAGGCGAGTACCCAGAAAGGATTGGGCAGCCAGAATGTCAGGCATGTACTTGTTTCTCAATGAGTGCATAA 312 0.4519 MIDSYSSMEFDAAIRDPLPQDAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEYPERIGQPECQACTCFSMSA. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00854 103 PANTHER PROTEIN PHOSPHATASE RELATED 23 94 - -
Seca1g00854 103 ProSiteProfiles Zinc finger C3H1-type profile. 43 70 IPR000571 GO:0046872
Seca1g00854 103 SUPERFAMILY CCCH zinc finger 47 70 IPR036855 GO:0046872
Seca1g00854 103 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Seca1g00854 103 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Seca1g00854 103 Gene3D - 35 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00854 Seca-Chr1 11059712 11062117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00854 23 94 C2H2 Transcription Factor Family AT3G02830 83.333 3.22e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g00854 zf-CCCH 7.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00854 - - adu:107485976 176.022