Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00849 ATGGACTCAGTATTGGCCTCCTTGCCTGCTTTTTCTGATTCCAGAACTAAAGGGTTTTTGTATTATTTGCAGGATGTTTCTTTACCTATCCTCAAGGATTCTATCATGGAGGCTCTGAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGCCTCGTTGGTTGCTTTAGAAAATTGCAGAATTGGTGTTTGTCTTCTGTGTTTGAAGAGTACCAGCGATTTGCTGGTGTTAAATCCAGGATAACGGATTTAACATTCATAGAAATGTTTGATATCATAAGCCTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGTTATGGTTCAAAGAAGCGTCGTTTGTTGTATAAAGAGGAGAATTTACAGAAGCCTCCCCGTCTGGCATCATTTTAG 435 0.3977 MDSVLASLPAFSDSRTKGFLYYLQDVSLPILKDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYQRFAGVKSRITDLTFIEMFDIISLRQCLYSIIYQYQGYGSKKRRLLYKEENLQKPPRLASF. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00849 144 Gene3D Protein tyrosine phosphatase superfamily 9 106 IPR029021 -
Seca1g00849 144 ProSitePatterns Tyrosine specific protein phosphatases active site. 52 62 IPR016130 GO:0016311|GO:0016791
Seca1g00849 144 Pfam Tyrosine phosphatase family 27 104 IPR004861 -
Seca1g00849 144 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 24 104 IPR029021 -
Seca1g00849 144 PANTHER TYROSINE-PROTEIN PHOSPHATASE 28 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00849 Seca-Chr1 11004477 11007137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00849 25 138 Protein tyrosine phosphatase (PTP) family AT3G02800 70.175 2.53e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00849 K18045 - gmx:100787713 214.157