Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00846 ATGAAAGAAGACAACATTAACAACAATTGTGATGATGAAATCTATGTTTCTGATTTGAAAAGAGGAAACTTTCAAGGTTTTCCAGGCAAAAGAAGCATTGCTGAGAGAAGGGGTTTCAATTCCAATCCAGCAAGGATCAACACAACACTTTTTCACACAGCACCTTCAACTTCAAAAACCCCTCTTGGTTCTCCTATAGCTCAATCACCTTGTCTCACCATACCACCTGGCATTAGCCCCACTGCATTGCTTGACTCTCCTATCATGCTTCCCAATTCTCAGGCCTTGCCATCTCCCACCACTGGGAGTTTCCTCACGCTGCCAGCTTTCACATCTGAACTTGGGAATATGGATGTGGCCACTGCCTCCTTCAAACTGAAACCTCAATATGCAAATCTGGATCCTAATTGTTCATCTGCCTACCTTGCTTCTCTAAATCAGGTTTCTAGTAATTACCACATGGTAAAGGGAGGAGATAGAGACAACCAACGACGTGCTCAAGTTCAACGACCATTAGATTTTTCAATCCTAGCAGATTTTCCAAATGGCTATTCTACAAAAAATAGTGAAGTCTACAATGATGTGACAATGGTAGATGATGTTAATGTTAATGCTAATAAGGTCGAGATGCCAATGTCTCGTTCTGAGGAAGCTAGTAGTGAAAGCACTCTACTTGAAAATCCTATCCATGGTGAGGATATTGGACAACAACTTGCTATAGAAGAACAGAAAGAGCCATCCCATGCAACAGGAGTGGTAAGGACCTCAGAGGATGGTTATAATTGGAGGAAATATGGACAAAAACAGGTTAAAGGTAGTGAATATCCCAGAAGCTACTACAAATGCACTCAGCCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCCCATGATGGCCAAATAACTGAAATAATTTACAAAGGTACTCATAACCATGCAAAACCAAATCCTAGTCGTCGATCATCAACACTTTCTACTGATGAGATGTCAGAAATTGCTGAAGCTGGCGAAACCAGTGGTAAAGTTGATGTTGATTCTGTTTGGGGAAATATTCAGTCAGGGATGAAAAATGCAAAACACGGTATGGAATGGAAGACTGATGGTCAGGAAAGGACATCCTCAACTTCTGTTGTGACTGAGCTTTCAGATCCTATGTCAACCAAGAAAGGTAAACCTCCATGTATGAATGAATCGGAGGATACTCTAGAGCTTTCTTCTACAAATGCTAGTCATAATGGTGATGAAGATGGAGCCACTCAAGCAATTGTATCACTTGAAGATGATGTTGAAGATGATGAATCAGAGTCAAAAAGAAGGAAGAAGGAGAGCTACACAGTTGAATCAAATTTGTCTTCCAGGGCTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAATAGACATACTTGATGATGGTTATCGCTGGCGGAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGTACAAGTGTTGGATGTACTGTAAGGAAACATGTGGAAAGGGCTTCCCACAATCTAAAATATGTTGTTACTACTTATGAGGGGAAACATAATCATGAAGTGCCCACTGCTAGAACCAACAACCAGATAAGCTCAAGTGATGGTGGCTTACCTCCCACTAGTGCTAATGGGCTTACATTATCCGGAAGTGCCAGTATCCCAAAGCTTGAAACTCGTCAAACTCTTGCTCCTCATTTTGATAGAAAACCTGAATTTAGCAATGATTTTCTCAGGCATGGTTTGATTGGAAGTTTCAATAATGATATGAAGTTTGGACCTTCCTCCATATGCCAAATGAAGTATCATTCCTTGAATAATACCATGCCTTATGGCTCCTATACCACCCCTCAAGCTGGATCTATTGCCCCAATTCTCCCTGATCTTCCAATGCCACTGCCATTGAATCTTCCCTCATCTGGAAATTTTTCTCTAACTGGAATTAACTTTAACTGTGTAAAACCAATGGGTCCTGTCCAGTCTTTCCTTTCAGGGCAGCAGATGAAGAACATTGATACAGGGTTCCTGAGGCCTAAACAAGAGCAGAAGGATGATACTGTGTATGGAACATGTATACCCCCTCTTGATCATGCAAACACTTCACTTAATCCGTCAACATCACAATCCATTTATCAACGTGTCATGCAAAATTTCCCTTCATAA 2187 0.4106 MKEDNINNNCDDEIYVSDLKRGNFQGFPGKRSIAERRGFNSNPARINTTLFHTAPSTSKTPLGSPIAQSPCLTIPPGISPTALLDSPIMLPNSQALPSPTTGSFLTLPAFTSELGNMDVATASFKLKPQYANLDPNCSSAYLASLNQVSSNYHMVKGGDRDNQRRAQVQRPLDFSILADFPNGYSTKNSEVYNDVTMVDDVNVNANKVEMPMSRSEEASSESTLLENPIHGEDIGQQLAIEEQKEPSHATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHAKPNPSRRSSTLSTDEMSEIAEAGETSGKVDVDSVWGNIQSGMKNAKHGMEWKTDGQERTSSTSVVTELSDPMSTKKGKPPCMNESEDTLELSSTNASHNGDEDGATQAIVSLEDDVEDDESESKRRKKESYTVESNLSSRAVREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCTVRKHVERASHNLKYVVTTYEGKHNHEVPTARTNNQISSSDGGLPPTSANGLTLSGSASIPKLETRQTLAPHFDRKPEFSNDFLRHGLIGSFNNDMKFGPSSICQMKYHSLNNTMPYGSYTTPQAGSIAPILPDLPMPLPLNLPSSGNFSLTGINFNCVKPMGPVQSFLSGQQMKNIDTGFLRPKQEQKDDTVYGTCIPPLDHANTSLNPSTSQSIYQRVMQNFPS. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00846 728 Pfam WRKY DNA -binding domain 257 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 Pfam WRKY DNA -binding domain 472 529 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 MobiDBLite consensus disorder prediction 531 559 - -
Seca1g00846 728 SMART WRKY_cls 471 530 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 SMART WRKY_cls 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 ProSiteProfiles WRKY domain profile. 251 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 MobiDBLite consensus disorder prediction 307 328 - -
Seca1g00846 728 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 MobiDBLite consensus disorder prediction 526 559 - -
Seca1g00846 728 MobiDBLite consensus disorder prediction 399 417 - -
Seca1g00846 728 MobiDBLite consensus disorder prediction 432 446 - -
Seca1g00846 728 FunFam WRKY transcription factor 57 457 531 - -
Seca1g00846 728 SUPERFAMILY WRKY DNA-binding domain 254 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 FunFam WRKY transcription factor 243 316 - -
Seca1g00846 728 Gene3D WRKY domain 246 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 ProSiteProfiles WRKY domain profile. 466 531 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 188 549 IPR044810 GO:0003700
Seca1g00846 728 SUPERFAMILY WRKY DNA-binding domain 464 531 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00846 728 MobiDBLite consensus disorder prediction 358 453 - -
Seca1g00846 728 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00846 Seca-Chr1 10956371 10963134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00846 3 534 WRKY Transcription Factor Family AT5G56270 41.848 1.38e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00846 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00846 K18835 - gmx:100800211 966.066