Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00840 ATGGAAGGCTCTGTCAGTACTGAGCGTCTTGATTTTGGGAAGATGGGATATGGGTGCCAGCATTATAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACCCCTGTCGTCATTGTCATAACGAGGAAACGAGCATGTTGAGGAATCCCTTTGATCGGCATGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAAAATGGGAGAATATTTTTGCAACATCTGCAAATTCTTTGATGATGATACAGAGAAGCAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGACAAGAGAATTTTTTCCATTGCAAGAAGTGCGGGTCTTGCTATTCAGTCAATCTGCGTGATAATCACTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTATTGTCATGAAATGTGGTCACACAATGCACTTTGAATGTTACCAAGAGATGATAAAACGTGACAAGTACTCTTGTCCCATATGCTCCAAGTCAGTGGTTGACATGTCTATGATTTGGAAGAGAATTGATCAAGAGATTGAAGCTACTGTCATGCCCGAAGTTTATCGGTACAGGAAGGTTTGGATACTATGTAATGATTGCAATGACACAACTGAAGTTTACTTCCACATTGTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCAATTGCACCTCCGGTTCTTCCTCAATGA 807 0.4226 MEGSVSTERLDFGKMGYGCQHYRRRCRIRAPCCNEIYPCRHCHNEETSMLRNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGQENFFHCKKCGSCYSVNLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHFECYQEMIKRDKYSCPICSKSVVDMSMIWKRIDQEIEATVMPEVYRYRKVWILCNDCNDTTEVYFHIVGQKCGHCSSYNTRAIAPPVLPQ. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00840 268 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Seca1g00840 268 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Seca1g00840 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Seca1g00840 268 CDD RING-H2_Pirh2-like 153 197 - -
Seca1g00840 268 Pfam Ring finger domain 153 196 IPR001841 -
Seca1g00840 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 227 IPR013083 -
Seca1g00840 268 SMART ring_2 154 196 IPR001841 -
Seca1g00840 268 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Seca1g00840 268 Pfam Zinc-ribbon 201 259 IPR039512 -
Seca1g00840 268 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Seca1g00840 268 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Seca1g00840 268 SUPERFAMILY RING/U-box 153 206 - -
Seca1g00840 268 Gene3D - 228 263 - -
Seca1g00840 268 FunFam RING finger and CHY zinc finger domain-containing protein 1 225 267 - -
Seca1g00840 268 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00840 Seca-Chr1 10892886 10896662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00840 11 267 C2H2 Transcription Factor Family AT3G18290 40.076 8.80e-56 191