Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00839 GGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTACTCTATAATAGAGTGTGAGCCGACGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAGATTTTGCGGAGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTTCAGTCGTTGGAGTTTTTCGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACCGCACTTGCATTCTCCCAGAAGCTATCTGGTCTCCCACCAGAGACTGTGTTCCAACCACTTCTTAAAGATAATCTTGTGGCCAAAGGGATAGTTCTGACATTTATAACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAGGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCTAATGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGTCTGGTGGCCTTGGTGGAGTATAATGACAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTAACAACACAAATAACTGAGGAGGCTGATATATCTGAAGTCATTGAGACTGTCAAGGTGCGAGTTAGAGATGCTAAATTGCCAGACATTGAGGTTGTGCGGGTCCTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGGAAAAACCAGCAACAGAATGCAAATTCAGCCTTGCGCCAGGTAAAAACTTGGGCAGAACTGCTGAATACATTCTGCACCAGTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTTGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTGAAGGCCCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAAGAGGAATAA 1137 0.4406 GTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLVVFTGGRTQPGTTKPDEGERHPYSIIECEPTREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLTFITDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNESFSEHFSKEGLVALVEYNDKKIFEVKLKEMKSALTTQITEEADISEVIETVKVRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00839 378 Pfam eIF4-gamma/eIF5/eIF2-epsilon 305 378 IPR003307 GO:0005515
Seca1g00839 378 ProSiteProfiles W2 domain profile. 213 378 IPR003307 GO:0005515
Seca1g00839 378 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 36 378 - -
Seca1g00839 378 SUPERFAMILY ARM repeat 220 375 IPR016024 -
Seca1g00839 378 Coils Coil 88 108 - -
Seca1g00839 378 FunFam ARM repeat superfamily protein 210 378 - -
Seca1g00839 378 SMART 542_3 292 377 IPR003307 GO:0005515
Seca1g00839 378 Gene3D - 209 378 - -
Seca1g00839 378 CDD W2_eIF5C_like 183 371 IPR043510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00839 Seca-Chr1 10752868 10756556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00839 267 374 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 1.53e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00839 - - gmx:100782537 700.664