Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00837 ATGGGGTCCTGCTTCTCTGCGGAAAGCAGGAGCCCTCACCCCAATTCACCAACCTCTCCTTTCAGGAAACGAAAGAACAGCAACAAAAAGAGGCTTGGATCAAGAGCCTCTTCTTTTGAGTATTGGAGGAATGAGCCACTTCATAGGATCCCTGGCAGGATCTTCCTCAATGGCTCCAGCCAAGTTGCCTCCTTGTTCACCCAACAAGGAAAGAAGGGCACCAACCAAGATGCCATGGTTGTTTGGGAGAACTTTTGTTCTAGACAAGATACAATTTTCTGTGGAGTTTTTGATGGCCACGGTCCATTTGGTCACATGGTTGCAAAAAGAGTGAGGGATTCTCTCCCTCTAAAACTGAATGCCCATTGGGAACCTAATGTATCTGGTGAGGAAGTCCTCAAGGAGATTAGCGTTAACACCGCAGGGAGCTTGAACTCAGAAGATGCTGCCTTTGTATCTGCTGATGAGGAATCCAGGGTATCCGTTGATGCTGAGGAAATGGAAAAATCCGAAAAACACCCTGAAATCTTTCAGACACTTAAAGAGACCTTTTTGAAGGCATTCAAAGTTATGGATAGAGAACTGAAGATGCACCAAACTATTGATTGCTTCTGTAGCGGGACAACAGCAGTAACTCTGATTAAGCAGGGTCGTGATCTTGTGATTGGAAATGTTGGTGACTCTAGAGCTGTGCTGGGTACCAGAGACAAAGATAATTCCCTTGTTGCAGTCCAGTTAACTGTGGATCTAAAACCCAATCTTCCTGCTGAAGAAGAGAGAATCCGCAATTGTAAAGGACGAGTCTTTGCTCTGCAGGATGAACCTGAAGTTGCTCGAGTCTGGTTACCAAATAATGACTCCCCTGGCCTTGCCATGGCAAGGGCATTTGGAGATTTTTGTCTGAAAGATTTTGGTCTGATATCTGTTCCAGAGGTAACATACAGACGTCTCACTGAGAAGGATGAATTCGTTGTCTTAGCAACAGATGGGATTTGGGATGTGCTTTCAAACAAAGAAGTGGTAGACATTGTAGCAGCATCACCAAGGAGATCCTCAGCAGCTAGAGCATTAGTTGAGTCAGCAGTTAGAGCATGGAGATACAAATATCCAACTTCCAAAGTGGATGATTGTGCTGTGGTGTGCCTCTTTTTGGACTCAGACTTAAACAAAATATCTAGTGCTTCTTCCCATGTAACCAAGTCCAAAGAGCAGCCTAGTTCAATGATCCAAGTAAGCAATGGTGATGGAGTGGAAGAAGATGTTTCTGGACCTACTGGTCTAGAAAGATCAGGAACATGTAGGGAAGGAAATGGTGAAGGTAACACTTCACATGAAGAGGAAGAATTGAAGGAAGAAGAGGCAGAGATAGATGCTGATGAGTCAGAAAAAGAGTGGTCTGCACTTGAAGGGGTGTCTCGTGTGAACACATTGTTAAATCTTCCAAGATTTGTCCCTGACAAAGAAGACAAAGAAGCAGTAGCACAAGGGATGAGAAAACGCAAATGA 1506 0.4442 MGSCFSAESRSPHPNSPTSPFRKRKNSNKKRLGSRASSFEYWRNEPLHRIPGRIFLNGSSQVASLFTQQGKKGTNQDAMVVWENFCSRQDTIFCGVFDGHGPFGHMVAKRVRDSLPLKLNAHWEPNVSGEEVLKEISVNTAGSLNSEDAAFVSADEESRVSVDAEEMEKSEKHPEIFQTLKETFLKAFKVMDRELKMHQTIDCFCSGTTAVTLIKQGRDLVIGNVGDSRAVLGTRDKDNSLVAVQLTVDLKPNLPAEEERIRNCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEVTYRRLTEKDEFVVLATDGIWDVLSNKEVVDIVAASPRRSSAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSDLNKISSASSHVTKSKEQPSSMIQVSNGDGVEEDVSGPTGLERSGTCREGNGEGNTSHEEEELKEEEAEIDADESEKEWSALEGVSRVNTLLNLPRFVPDKEDKEAVAQGMRKRK. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00837 501 Gene3D - 57 386 IPR036457 -
Seca1g00837 501 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g00837 501 Pfam Protein phosphatase 2C 165 362 IPR001932 -
Seca1g00837 501 Coils Coil 442 464 - -
Seca1g00837 501 MobiDBLite consensus disorder prediction 396 413 - -
Seca1g00837 501 MobiDBLite consensus disorder prediction 1 32 - -
Seca1g00837 501 PANTHER PROTEIN PHOSPHATASE 34 382 IPR015655 GO:0004722|GO:0006470
Seca1g00837 501 CDD PP2Cc 61 384 IPR001932 -
Seca1g00837 501 FunFam probable protein phosphatase 2C 33 57 387 - -
Seca1g00837 501 MobiDBLite consensus disorder prediction 396 464 - -
Seca1g00837 501 SMART PP2C_4 53 382 IPR001932 -
Seca1g00837 501 ProSiteProfiles PPM-type phosphatase domain profile. 62 384 IPR001932 -
Seca1g00837 501 SUPERFAMILY PP2C-like 55 385 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00837 Seca-Chr1 10711874 10716268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00837 1 487 PP2C-type Phosphatase Gene Family AT3G02750 64.981 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00837 - - gmx:100790373 821.617