Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00832 ATGTGTGGAATATTTGCGTATCTGAATTACAACGTGAAAAGAGAGAGGAGATACATTTTACAGGTTTTGTTCAATGGCTTGAGACGGTTAGAATATCGTGGTTACGATTCCGCTGGAATCGCCATCGATTCTTCTTCTTCTTCTTCTCAACCTCAATGCTCCTCCAAATCCGATTCAACTTCTTCTCCTTCTCTTGTCTTCCGCCAAGAAGGAAACATCGAGTCTCTCGTGAAATCCGTCTACCAAGAAGTTGGTGAGATAGAATTGAACTTGGAGGAATGTTTCTGCACTCATGCGGGAATTGCTCACACGCGTTGGGCCACTCATGGAGAGCCTGCTCCAAGGAACAGTCATCCTCAAACCTCTGGTCCTGGCAATGAATTCTTGGTTGTTCATAATGGAGTTATTACTAATTATGAGGTTTTGAAGGAAACACTAGTCCGTCATGGCTTTACCTTTGAATCTGAAACGGACACAGAAGTCATTCCCAAGCTTGCCAAGTATGTTTATGACAAAGCAAACGAAGCAGCAGGTGGTCAGGTTGTCACCTTCAGTCAAGTTGTTCTGGAAGTTATGAGACATCTTGAAGGAGCCTATGCCCTTATTTTCAAAAGTCTACATTATCCTAATGAATTGATTGCTTGCAAGCGCGGTAGCCCACTGCTCCTAGGTGTTAAAGAATTGACAGAAAATAAGGAAAATGGTTCCGCATTTGAGGATAACAAACTCCTATCAAAAGATGGACAGCCAAAAGAGCTGTTCTTGTCTAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTGCTGGTTATTGAGGATGGTGAAGTTGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAGTTTGAGAATGACATAGGAGAACATGGTGCTTCTCTTTCCAGAACTTCTTCAGTGCGACGTGCATTGTCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGACATTATGAGCATTATATGCAGAAGGAAATTCATGAGCAACCTGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACATCGAGGATCTAGCAAATCCAAGTCTGTTCTATTGGGTGGATTGAAGGATCACCTCAAAACCATTAGGCGAAGTAGAAGAATAGTTTTCATTGGCTGTGGTACAAGTTATAATGCTGCTTTGGCGGCTAGACCCATCTTGGAAGAACTTTCTGGTATTCCTGTTACAATGGAAATTGCTAGTGATCTATTAGATCGGGAGGGACCAATATACCGAGAAGATACGGCCGTTTTTGTTAGCCAATCTGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGTGCATTATGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATAAATGCTGGTGCGGAGATTGGTGTGGCAAGTACCAAGGCATACACAAGCCAAATAGTAGTGATGGCCATGTTGGCTCTTGCAATAGGAGGCGATACAATTTCCAATCAAGCAAGGCGAGAAGCTATTATAGATGGTCTTTTTGACCTGCCAAATAAAGTCCGAGAGGTGCTAAAGCTTGATGAGGAGATGAAGGAACTGGCAAACCTATTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTGGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTTATGCATAGTGAAGGGATACTTGCTGGTGAAATGAAGCATGGCCCTTTGGCATTAGTGGATGAAAATCTTCCAATTGTTGTTATAGCTACTCATGACGCTTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTCATGCCCGCAAAGGTCGCCTGATAGTTATGTGTTCAAAAGGGGATGCTGCTTCTGTGTGCCCTGGTGAATCTTGTAGGGTCATTGAAGTTCCACAGGTTGTGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGGTATTTTTACAACCCTCTTTGACCTCTTTTACTGCTATATTTTATCCTTACAACATTACTACATTTGACACGAGAGAAACCTCGTAA 2082 0.4241 MCGIFAYLNYNVKRERRYILQVLFNGLRRLEYRGYDSAGIAIDSSSSSSQPQCSSKSDSTSSPSLVFRQEGNIESLVKSVYQEVGEIELNLEECFCTHAGIAHTRWATHGEPAPRNSHPQTSGPGNEFLVVHNGVITNYEVLKETLVRHGFTFESETDTEVIPKLAKYVYDKANEAAGGQVVTFSQVVLEVMRHLEGAYALIFKSLHYPNELIACKRGSPLLLGVKELTENKENGSAFEDNKLLSKDGQPKELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGVSILKFENDIGEHGASLSRTSSVRRALSVLEMEVEQINKGHYEHYMQKEIHEQPESLTTTMRGRLIHRGSSKSKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGIPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDEEMKELANLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVIATHDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCPGESCRVIEVPQVVDCLQPVINVVPLQVFLQPSLTSFTAIFYPYNITTFDTRETS. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00832 693 ProSiteProfiles SIS domain profile. 539 684 IPR001347 GO:0097367|GO:1901135
Seca1g00832 693 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 289 IPR029055 -
Seca1g00832 693 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 300 IPR029055 -
Seca1g00832 693 CDD GFAT 2 280 IPR047084 -
Seca1g00832 693 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 667 - -
Seca1g00832 693 ProSiteProfiles SIS domain profile. 368 507 IPR001347 GO:0097367|GO:1901135
Seca1g00832 693 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 532 669 - -
Seca1g00832 693 CDD SIS_GlmS_GlmD_2 534 667 IPR035490 -
Seca1g00832 693 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 324 531 - -
Seca1g00832 693 Pfam Glutamine amidotransferase domain 98 203 - -
Seca1g00832 693 MobiDBLite consensus disorder prediction 42 65 - -
Seca1g00832 693 Gene3D - 324 527 - -
Seca1g00832 693 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 283 IPR017932 -
Seca1g00832 693 CDD SIS_GlmS_GlmD_1 377 502 IPR035466 -
Seca1g00832 693 Gene3D - 528 667 - -
Seca1g00832 693 Pfam SIS domain 543 667 IPR001347 GO:0097367|GO:1901135
Seca1g00832 693 Pfam SIS domain 372 499 IPR001347 GO:0097367|GO:1901135
Seca1g00832 693 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 2 305 - -
Seca1g00832 693 SUPERFAMILY SIS domain 323 667 IPR046348 GO:0097367|GO:1901135
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00832 Seca-Chr1 10614031 10622159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00832 21 224 PRT Gene Family AT2G16570 25.000 1.72e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00832 K00820 - gmx:100779312 1196.03