Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00828 ATGGCTTCCGTTCCTCTGCTCCGCCCTTGTTTCCTCCACACCCCAAAACCCTCAACCCTAACACTCAGAAGGCCCTCTCTCACAGTCACTCCCTTAACATTCTCACCCCTATCTTCCAAACCCAAGCTCCGAAACGTCGTCGTTATGTCCTCCTCTTCCTCACCCCTACCAACAGAGCGGTTAATCTCCATCGCCGCATACACTCTCCCATTCTTCAATTCCCTCCAATACGGTCGCTTCATCCTCTCTCAATACCCCAAATTCGCACTCCTCTTCGACCCTATCATCCCCTTCCTCACTTTCTACAGGTCCATCCCTTACTCTTCCTTCGTCGCATTCTTCGCACTCTACTTAGGCGTCGTCAGAAACCCTAGCTTCCCTCACTATGTAAGGTTCAATGCAATGCAAGCCGTAACCCTCGATGTTCTCCTCGTCATTCCGCTGCTACTCCAGCGGATCTTCTCTCCGGGTCGGGCTGGCATCGGGTTCCGTGTCATGATTTGGTCACACAATGCTATCTTCCTTTTCAGCCTCGCTTGCTTCCTATACGGCGTCGTTTCTTGTGTCTTGGGTCGTACCCCTTACTTGCCCTTTGTTGCTGATGCTGCTTCTAGGCAAATCTGA 624 0.5176 MASVPLLRPCFLHTPKPSTLTLRRPSLTVTPLTFSPLSSKPKLRNVVVMSSSSSPLPTERLISIAAYTLPFFNSLQYGRFILSQYPKFALLFDPIIPFLTFYRSIPYSSFVAFFALYLGVVRNPSFPHYVRFNAMQAVTLDVLLVIPLLLQRIFSPGRAGIGFRVMIWSHNAIFLFSLACFLYGVVSCVLGRTPYLPFVADAASRQI. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00828 207 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 19 207 IPR005691 -
Seca1g00828 207 Pfam Chloroplast import apparatus Tic20-like 59 203 IPR005691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00828 Seca-Chr1 10591728 10592351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00828 117 204 Chloroplast and Mitochondria Gene Families AT4G03320 31.183 8.94e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00828 - - vra:106779574 266.544