Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00816 ATGGCCTCTATGAACTTGTTGGGTTTTTCTTTGTCCCCTCAAGAACACCCTTCTACAACTCAAACAGCACCTTCTCGTTTTGGCTTCAACCCTGAAGATCATGGAATCTCACCCACAGGACACTGCTTTGATCTCACTACTTCTGACTCAACAACTCACCATTCCCTCAACCTCCCTCCTTTTGCCATTTATGAAGAACAACAACCATTTCACACAAATCATAACAACAATCTTCATTCCACTCAACAAGATCATTGGAAGGAGAGCTACAACAACCAAAACTTGCTATTGGGAACTTCATGCAATAACCAAAATGTGAACAACCAACAACCAAAGCTTGAGAACTTCCTTGGAAGACACACTTTTGGTGATCATCATGACCATCCTTCAGCTGATTACATCTTTCCAAACTGCTCCTTACAACTTCCGGCTCAGCCGGAACCAGCCCCCTCCGCCGCCGTCAACGGCGGAGGTGGAAGCACAAACTCAATAGGTTTGTCAATGATAAAGACATGGTTGAGGAACCAACCACCACAATCAGACACCAACAACAATGAAAGTGCAACAACAACACGTGTGCAAAGTTTATCACTTTCGATGAGTACAGGTTCACAAACAAGTTCATCATTGCCTTCAAATGTGGGTGGAGAGAGTACCACATCGGATACCAAGCAAACAGATACCACACAAATTACTGTGCCAAGAAAATCCATTGACACATTTGGACAAAGAACTTCCATATACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATTTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGTAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACTACAACAAATTTTCCTATTAGCCACTATGAAAAGGAGTTGGAAGAAATGAAGCATATGACCCGGCAAGAGTACGTTGCATCATTGAGAAGGAAGAGTAGTGGATTTTCTCGCGGTGCATCTATTTATCGAGGAGTAACGAGGCATCATCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCTGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACACAAGAAGAGGCAGCAGAGGCCTATGATGTTGCAGCCATAAAATTCAGAGGATTGAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTTAAGAGCATACTTGAAAGCAGCACTTTACCAATTGGTGGTGCTGCTAAGCGTTTGAAGGATATGGAACAAGTTGTGGAACTGAGTGTGGATGGCCATAGGACAACAGATATTAATGAAGATTCCCATTTAACTGATGCCATCAATGTTAACTATGGTGTAGCACCAATCACACATCATCATCATGGTAATTGGCATGCTCTTACATTCCAATCTCAACCTCAGCCTTGTAATACTAGCATGCATTACCCTTATGGACAAAGACTTTGGTGCAAGCAAGAACAAGATTCTGATGCATCTCACACTTTCTCAGATATTTATCAACTACAGTTAGGGAATAACAACAACAACAATAACATCCACAATTTCTTTCAGTCAAATAATTCTGGTGGGTTGCATAGTGTCATGAGCATGAGCATGGACTCTGCTTCCATGGATAATAGCTCTGTTGTTTATGGTGGGGACTATGTGATTCCTATGGGAACTACTTCTACTACTGTTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAATAATGGTTTTGGTGATGCTAGTGAGATAAAGGCACTTGGTTATGAAAGTGTTTATGGTTCTGTTGCTACTGATAATCCTTATCAAGCACATGCAAGGAACTTGTATTATCTTTCTCAACAACAACAACAATCTTCCATGGATCATCATGCAGTTAAGGCTAGTGCATATGATCAAGGTTCCTCTTGCAATAATTGGGTTCCAACTGCAATTCCAACTCTTGCACCAAGGTCTAACAATGTGGCTCTTTGTCCACCCTTCACTTTATTGCATGAATGA 2040 0.4167 MASMNLLGFSLSPQEHPSTTQTAPSRFGFNPEDHGISPTGHCFDLTTSDSTTHHSLNLPPFAIYEEQQPFHTNHNNNLHSTQQDHWKESYNNQNLLLGTSCNNQNVNNQQPKLENFLGRHTFGDHHDHPSADYIFPNCSLQLPAQPEPAPSAAVNGGGGSTNSIGLSMIKTWLRNQPPQSDTNNNESATTTRVQSLSLSMSTGSQTSSSLPSNVGGESTTSDTKQTDTTQITVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDMEQVVELSVDGHRTTDINEDSHLTDAINVNYGVAPITHHHHGNWHALTFQSQPQPCNTSMHYPYGQRLWCKQEQDSDASHTFSDIYQLQLGNNNNNNNIHNFFQSNNSGGLHSVMSMSMDSASMDNSSVVYGGDYVIPMGTTSTTVIANDGNQNQRSNNGFGDASEIKALGYESVYGSVATDNPYQAHARNLYYLSQQQQQSSMDHHAVKASAYDQGSSCNNWVPTAIPTLAPRSNNVALCPPFTLLHE. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00816 679 CDD AP2 345 406 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 ProSiteProfiles AP2/ERF domain profile. 247 310 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 Pfam AP2 domain 247 302 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 Pfam AP2 domain 346 396 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 SUPERFAMILY DNA-binding domain 345 406 IPR016177 GO:0003677
Seca1g00816 679 Gene3D AP2/ERF domain 346 406 IPR036955 GO:0003700|GO:0006355
Seca1g00816 679 Gene3D AP2/ERF domain 247 312 IPR036955 GO:0003700|GO:0006355
Seca1g00816 679 MobiDBLite consensus disorder prediction 1 24 - -
Seca1g00816 679 ProSiteProfiles AP2/ERF domain profile. 346 404 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 FunFam AP2-like ethylene-responsive transcription factor 345 406 - -
Seca1g00816 679 CDD AP2 246 312 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 435 - -
Seca1g00816 679 SUPERFAMILY DNA-binding domain 246 312 IPR016177 GO:0003677
Seca1g00816 679 FunFam AP2-like ethylene-responsive transcription factor ANT 246 312 - -
Seca1g00816 679 PRINTS Ethylene responsive element binding protein signature 386 406 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 MobiDBLite consensus disorder prediction 174 229 - -
Seca1g00816 679 SMART rav1_2 247 316 IPR001471 GO:0003700|GO:0006355
Seca1g00816 679 SMART rav1_2 346 410 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00816 Seca-Chr1 10458357 10463206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00816 111 431 AP2-EREBP Transcription Factor Family AT5G17430 66.049 6.93e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca1g00816 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00816 K09285 - gmx:100797584 826.624