Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00806 ATGTGCTCCAACACCTTCTTCTCCTTCTTCCTCCATCGCCACTTTTCCATCACCACCAAGTTCCCAAACCTCTCTAAGATCCCCATCAGGCACAGAGACTTTGTTGTTCGTGAAGCCCAGAAGGCCCTCACTGATTACCTCCATGGCACCAGGTGCTTGCCTTTCACCTATGCAGAGCACATGGGCAACAACACCCTTCGTTCCCTCACCAATCTCATTGAAAAGGTAGAATTTTCCGCCTCCACTTTCTCCAAAAGCTTTCAGAGGGTTCTTAGGTACCACCCCGTTAACGAATTTGAAGTCTTTTTTGAAAGCATAGGCATAGATTACAACCTGGTTTCTGCGTTGTTGCCTGATGACAAGGTTTTCTTCTCCCAAGATGGGACCCTTCTTGATGCTGCTCGTGCACTTTCTGATTTTGGGTTTCCGTGGGAGAAGTTGGGTGTGTTGTACATGGAGAGGAGCTCCATATTTGGGAGAAGTGCTGCAGAGTTGAAATCAAGGCTTAGTGAGTTTAAAGGGTTTGGTTTTGGTAATGTTGAAATCATTGGCATTTGTTTGGCTTTCCCTTTTGTTCTGAGTGAGGAAGGTCAAGTAGGTGTTGTAATTGATAGGTTGTTTAATGATCTGAGGTTGATATTTTTGGATTTTGCTTTGGCAAGGTCTATTGAGGGAAATGTGGATTCTTGGCATGAGGTGTGTAGGAAATTGCGAGTGTTTTTTGATTTAGATGGTTGGAATGGCAAGTTAGGGGAGCTCATGGGAAGGAATAAGAGTATCTTTCTTGAACACAAAGAAGAGGAGTTAGTTAATAAAGTAGAGTATTTCTGTAGATTTGGTGTAAAGAAGGAGGAAGTGGCTCAGTTGATTCTACAATGCCCTGAATTGATAAATTTTGATTTGGAGAATCCAGTGATTAATGTATTGAAACTGTTGAAACACTTTGGCCTGAGCTCTGAAGATCTGAAGGATGTCAGTGAAAATTTTGCTCATGTGTTGGGAACAAATAAAATGGTTAATCTACCTAATGTAATGAGGGCTATAGGTTTACAAGAGTGGTTCTTCAATAAAATCAAGGGTGGACATCATCAGTTGTTAGCGGATTATATCACAAGCTATCCTAATGAAGACCAGGATAAGGATTATCAAGATGGCTTAAGGAGAATTCACATTTCAAGAGCCCGAGTTCACGCCATTAATAAATTAAATTTCTTGCATGGCTTAGGCTTTGGAGAAAATGCTTTGACTATTGATGTTTTGAATAATTTGCATGGCACTAGTAGTGAGTTACAGGAAAGATTTGATTGCCTTCTGCGCTCAAGGATTGAATTCTCAAAGCTATGTATGATGGTAAGGATGACCCCCAGGATTCTAAACCAGAATTCTGAAATTATAGAGCGGAAAGTGAATTTCTTCAATCAGGAAATGGGAACTACTCTAGACTATGTAGATACTTTTCCAGCAATGTTGCATTATCACCTAGAGGACCGAATTATACCTAGGTACAGATTCCATATGTGGCTTACTGAAAAGGGTCTGTCTTGTAAAAAATATTCCATTCGAAGTATGATTACAAACAGCGAAAGGAAATTTGTAGCTCGGGTGTTTAAAATTCATCCAGCTGCTCCAAAACATTGGTTTGAGAAATTCTGTCACAGTAAATTGTCAATGCAATGA 1677 0.4031 MCSNTFFSFFLHRHFSITTKFPNLSKIPIRHRDFVVREAQKALTDYLHGTRCLPFTYAEHMGNNTLRSLTNLIEKVEFSASTFSKSFQRVLRYHPVNEFEVFFESIGIDYNLVSALLPDDKVFFSQDGTLLDAARALSDFGFPWEKLGVLYMERSSIFGRSAAELKSRLSEFKGFGFGNVEIIGICLAFPFVLSEEGQVGVVIDRLFNDLRLIFLDFALARSIEGNVDSWHEVCRKLRVFFDLDGWNGKLGELMGRNKSIFLEHKEEELVNKVEYFCRFGVKKEEVAQLILQCPELINFDLENPVINVLKLLKHFGLSSEDLKDVSENFAHVLGTNKMVNLPNVMRAIGLQEWFFNKIKGGHHQLLADYITSYPNEDQDKDYQDGLRRIHISRARVHAINKLNFLHGLGFGENALTIDVLNNLHGTSSELQERFDCLLRSRIEFSKLCMMVRMTPRILNQNSEIIERKVNFFNQEMGTTLDYVDTFPAMLHYHLEDRIIPRYRFHMWLTEKGLSCKKYSIRSMITNSERKFVARVFKIHPAAPKHWFEKFCHSKLSMQ. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00806 558 SMART mt_12 148 178 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 SMART mt_12 448 479 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 SMART mt_12 287 318 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 SMART mt_12 480 514 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 Gene3D Transcription termination factor 3, mitochondrial 354 552 IPR038538 -
Seca1g00806 558 Gene3D Transcription termination factor 3, mitochondrial 63 213 IPR038538 -
Seca1g00806 558 Pfam mTERF 429 531 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 Pfam mTERF 240 341 IPR003690 GO:0003690|GO:0006355
Seca1g00806 558 PANTHER CGI-12 PROTEIN-RELATED 164 538 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00806 Seca-Chr1 10308999 10312760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca1g00806 mTERF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00806 - - lja:Lj1g3v2862750.1 751.125