Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00804 ATGGAAGAAGATAACATCAATAACAGTAACAACAACAAAAACAACATCTGTGGTTATGAATTCTTTGTTTCTGATTCGAAAAGTGGAGACTTTCAAGGTTTTTCAGCCAAAAGAAGCATTGCTGAGAGAAGGGGTTTTAATTCCAATGCAGCAAGGATCAACACAGCGCTTTTTCGCACTGCACCTTCAACTTCAACAACCCCTTTGGCTTCTCCGGCAGCTAGATCACCTCGTCTCACCATTCCCCCTGGCATCAGCCCCACTGCATTGCTTGACTCTCCTATCATGCTCCCCAATTCTCAGGCCTTGCCATCTCCCACCACTGGAACTTTCCTCATGCTGCCACCTCTCACTCAAGAAGGATCAATGCTCACTTCTGAACAAGGGAATGTGGATGTGGCCCCTGCTTCTGATGCTGCTGACTCCTTCAAATTCAAACCTCATGCCAATTTGGATCCTAATTGTTCACCTGCCTACCATGCTTCTCTAAATCAGGTTTCTAGTAATTGCAACATGGTAAAGGGAGGAGATAGAGACAACCAACTACTTGCTCAAGTTCAACCACCATTAGATTTTTCATTCCCAGCAGATTTTCCAAATGGCTATTCTGCAAAAAAAAGTGAAGTCCATTCTTACAATGATGTGACAATGGTAAGTGATGCTATTGTTAATGCTAATACTGTTGAGATGCCAATGTCTCGTTCTGAGGAAGCTAGTGATGAAAGCACTCTGCCTGAAAATGCTATCCATGGTGAGAATATTGGACAACAACTTGCTTTAAAAGAACAGAAAGAGACATCCCATGCAACAGGAGTGATAAGGACCTCAGAGGATGGTTATAATTGGAGGAAATATGGACAAAAACAGGTAAAAGGTAGTGAATATCCCAGGAGCTACTATAAATGCACTCAGCCTAATTGTCATGTCAAGAAAAAGGTGGAAAGATCCCATGATGGCCAAATAACTGAAATTATTTACAAAAGTACTCATAACCATGCAAAACCAAATCCTAGCCGTCGAGCATCAGCACTTTCTACTGATGAGATGTCAGAAATTGTTGAAGCTGGTGAAACCAGTGGTAAAGTTGATGCTGATTCGGTCTGGGGAAATATTCAGTCAGGGATGAAAAATGCAAGATACAATATGGAATGGAAGACTGATGGTCAGGAAAGGACATCCTCAACTTCTGTTGTGACTGAGCTTTCAGATCCTATATCAACTAAGAAAGCTAAACCTCCATGTATGAATGAATCGGAGGATACTCCAGAGCTTTCTTCTACAAATGCTAGTCATTGTGGTGATGAAGATGGAGCCACTCAAGCAATTGTATCACTTGAAGATGATGCTGAAGATGATGAATCAGAGTCAAAAAGAAGGAAGAAGGAAAGCTACACAGTTGAATCAAATTTGTCTTCCAGGGCTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAGTAGACATACTTGATGATGGTTATCGCTGGCGGAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACAAGTGCTGGATGTACTGTAAGGAAACATGTGGAAAGGGCTTCCCACAATCTAAAATATGTTGTTACTACTTATGAGGGAAAACATAATCATGAAGTGCCTACTGCTAGAACCAACAACCAGATAAGCTCAAATGATGGTGGCTTACCTCCCACTGGTGCTAATGGGCTTACATTACCCGGAAGTGCCAGTACTCCAAAGCCTGAAACTCGTCAAACTCTTGCTCCTCATTTTGATAGAAAACCTGAATTTAGCAATGAATTTCTCAGGCATGGTTTGGTTGGAAGTTTCAGTAATGATATGAAGTTTGGACCTTCCTCCATGTGCCAAATGAAGTATCCTTTGAATAATACCATGCCTTATGGCTCCTATACCGCCCCTCAAGCTGGATCCATTGCCTCAATGTTCCCTGGTCTTCCAATTCCACTGCCATTGAATCTTCCCTCATCTGGAAATTTTTCTCTAACTGGAATTAACTTTAACTGTGTAAAACCAATGGGTCCTGTGCAGTCTTTCCTTTCAGGGCAGCAGATGAAGGACATTGATACAGGGTTCCTAAGGCCTAAACAGGAGCAGAAGGATGATACTATGTATGGATCATGCATACCCTCTCTTGATCATGCAAATGCTTCACTCAATCCGTCAACATCACCATCCATTTATCAAAGTGTCATGCAAAATTTCCCTTCATAA 2244 0.4198 MEEDNINNSNNNKNNICGYEFFVSDSKSGDFQGFSAKRSIAERRGFNSNAARINTALFRTAPSTSTTPLASPAARSPRLTIPPGISPTALLDSPIMLPNSQALPSPTTGTFLMLPPLTQEGSMLTSEQGNVDVAPASDAADSFKFKPHANLDPNCSPAYHASLNQVSSNCNMVKGGDRDNQLLAQVQPPLDFSFPADFPNGYSAKKSEVHSYNDVTMVSDAIVNANTVEMPMSRSEEASDESTLPENAIHGENIGQQLALKEQKETSHATGVIRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCHVKKKVERSHDGQITEIIYKSTHNHAKPNPSRRASALSTDEMSEIVEAGETSGKVDADSVWGNIQSGMKNARYNMEWKTDGQERTSSTSVVTELSDPISTKKAKPPCMNESEDTPELSSTNASHCGDEDGATQAIVSLEDDAEDDESESKRRKKESYTVESNLSSRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVVTTYEGKHNHEVPTARTNNQISSNDGGLPPTGANGLTLPGSASTPKPETRQTLAPHFDRKPEFSNEFLRHGLVGSFSNDMKFGPSSMCQMKYPLNNTMPYGSYTAPQAGSIASMFPGLPIPLPLNLPSSGNFSLTGINFNCVKPMGPVQSFLSGQQMKDIDTGFLRPKQEQKDDTMYGSCIPSLDHANASLNPSTSPSIYQSVMQNFPS. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00804 747 Gene3D WRKY domain 478 544 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 FunFam WRKY transcription factor 57 477 551 - -
Seca1g00804 747 MobiDBLite consensus disorder prediction 387 403 - -
Seca1g00804 747 MobiDBLite consensus disorder prediction 58 80 - -
Seca1g00804 747 SUPERFAMILY WRKY DNA-binding domain 274 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 SUPERFAMILY WRKY DNA-binding domain 484 551 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 MobiDBLite consensus disorder prediction 546 589 - -
Seca1g00804 747 ProSiteProfiles WRKY domain profile. 271 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 SMART WRKY_cls 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 SMART WRKY_cls 491 550 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 MobiDBLite consensus disorder prediction 452 466 - -
Seca1g00804 747 ProSiteProfiles WRKY domain profile. 486 551 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 MobiDBLite consensus disorder prediction 419 434 - -
Seca1g00804 747 MobiDBLite consensus disorder prediction 386 472 - -
Seca1g00804 747 Gene3D WRKY domain 263 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 MobiDBLite consensus disorder prediction 58 73 - -
Seca1g00804 747 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 197 578 IPR044810 GO:0003700
Seca1g00804 747 Pfam WRKY DNA -binding domain 277 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 Pfam WRKY DNA -binding domain 492 549 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00804 747 FunFam WRKY transcription factor 262 336 - -
Seca1g00804 747 MobiDBLite consensus disorder prediction 551 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00804 Seca-Chr1 10282029 10286369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00804 1 554 WRKY Transcription Factor Family AT5G56270 41.593 2.46e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00804 WRKY 9.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00804 K18835 - gmx:100800211 1045.42