Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00799 ATGGAGGATTCATTGAAGAATTGGGTTTCTCATTTGGAAATGGAAGATGAAATCTACTACAATCAAGATGGTCATAGCTCATTTGATGAGGAAGAGTTCCTCAAAGAGATTCTTCAGAAGCCAGATTTTTTCTCACCTGAAAGTGATGAACAACTTCTTCCCTCCCCTGATTCTTGTTGCAAAATCCAAAATGACAGTGTTGAAGGTGTTGGTGTCACAAGTCCTAGCAATAGCACCTTGTCCTTTGATGAGACAGGGTTTGATGGCAACAATGGCAGCCTCCAAAAGAGTAACAGCTCAAACTCCATTATGTCTTTGGAAAGATCATGTGTGTATTCTCCAGCTGGAGTTGGATACCTTTTATCTTTTGATAACTCAAGTGGTGTTGAACCAATTGCCCCTCAACCACCTAGAGGGAAGCATAATAATTTGGGATTGGGGTCCAATAAAAGGAAAGATGGGTTTGAATTTGAGCCAAGAGTGGTGAATCAAGCAACAAAGAAGGGAAGGAGATCATCTGAGACAAAAGATGATCACATAATGGCTGAGAGGAAAAGGAGACAGGAATTGACAGGGAACATCATAGCACTTTCAGCAACTATACCTGGGTTGAAGAAGATGGACAAGGCTTATGTACTTGGTGAAGCGGTGAATTACGTGAAACAACTTCAAGAGCGTATTAAAGAATTGGAGAATCAAAACAGAGATAAAAGAGAAGATTCAGCAATATTCATAAGGAAAAAATCTCAATCTAATTCCTCAAATAATAATAAAAGCACCTCCTGTTGTGAAATGAACACAGAATCATCACTTGAGGTTGAAGCAAGAGTTGAAGAGAAGGAAGTACTAATTGGAATTCATTGTGAGAAACAAAAGGACATAGTGCTCAAAATACATGTCTTGCTTGCTGAAAAGCTCCATCTCTCTGTAACCAGTAGTACCGTATTACCATTTGGGCCTTCTACTCTTATAATTAACATTATTGCTCAGGTATGA 996 0.3896 MEDSLKNWVSHLEMEDEIYYNQDGHSSFDEEEFLKEILQKPDFFSPESDEQLLPSPDSCCKIQNDSVEGVGVTSPSNSTLSFDETGFDGNNGSLQKSNSSNSIMSLERSCVYSPAGVGYLLSFDNSSGVEPIAPQPPRGKHNNLGLGSNKRKDGFEFEPRVVNQATKKGRRSSETKDDHIMAERKRRQELTGNIIALSATIPGLKKMDKAYVLGEAVNYVKQLQERIKELENQNRDKREDSAIFIRKKSQSNSSNNNKSTSCCEMNTESSLEVEARVEEKEVLIGIHCEKQKDIVLKIHVLLAEKLHLSVTSSTVLPFGPSTLIINIIAQV. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00799 331 SMART finulus 180 229 IPR011598 GO:0046983
Seca1g00799 331 MobiDBLite consensus disorder prediction 231 265 - -
Seca1g00799 331 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Seca1g00799 331 PANTHER BHLH TRANSCRIPTION FACTOR 33 331 - -
Seca1g00799 331 Coils Coil 213 247 - -
Seca1g00799 331 MobiDBLite consensus disorder prediction 246 265 - -
Seca1g00799 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Seca1g00799 331 Gene3D - 164 240 IPR036638 GO:0046983
Seca1g00799 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 242 IPR036638 GO:0046983
Seca1g00799 331 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00799 Seca-Chr1 10179696 10183792 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00799 164 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.821 9.53e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g00799 HLH 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00799 - - aprc:113863851 374.015