Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00797 ATGATTGATGGTGAGGATGAAGATGATGATTTTTTTAACCAAAGCCATATGAGCTCTTTCAATGAAGAAGAGTTTCTAAGAGATATTATTATTGATCAATCAGTTTTCTCTCCTGAAAATGACAACATGCCCTCTCCCAATAATCCTTCTTCTTATAATTCCCCAATGCAAAACAAATTTGTAGGATCTGCAATTGCTGACCCTTGTGGTGTTGCAACATCCACAAGCACCACCAATAGTGGTTTATTCTTTGATGAGACAAACTTGGATGGGCATGGCACTCTTCTCAAGAGTAGTACCTGCTCCAACAACTTAGAGAAGAAACCTTCCCCATTATCTCCAACATGCTACATTTTGTCTTTTGATGGTGTTGATTACCCTCAACATAACCCTGCTTTGGTGTCCTCTGAAAACAGGGCACAGGATCATTGCATTGAATTACCAAACTCGCACCAACGAACAAAGAAAGCTAGAAACTCTTCTGCGAGTGAAGTTCACATAATGGCCGAGAGAAAAAGGAGACAGGAATTGACTAAGAGCATTGTAGCACTTTCATCCACAATACCTAGCTTGAAGAAGAAAGACAAGGCCCATGTAGTTCGTGAAGCTGTGAATTATGTGAAAGAACTTGAAGGACGCGTGAGAGTGTTAGAGAATCAAAACAGAAAGAAATATACAGAGTCAGTAATATTGATGAAGAAAACACAGCTATGCATAAAAGAAGGCACTGATGATATTCTCTCCTCTTGTGATGGTCGCTCTGGACGCAATATTGAAGAACTCCCTGAGGTTGAAGCAACTGTTTTACAGAAGGAAGTGCTCATTGGAATCCACTGTCACAAACAAAAGCAGAGTTTCCTCAAAATATTGACCTTCCTTAATCATAACCATCTTTCTGTAACCAGTACCAGCGTATTGCCATTTGGAACTTCCACTGTTAAAATTACCACTATTGCTCAGGTCAGGTACAAAACAATTTCTTTTTAA 987 0.3931 MIDGEDEDDDFFNQSHMSSFNEEEFLRDIIIDQSVFSPENDNMPSPNNPSSYNSPMQNKFVGSAIADPCGVATSTSTTNSGLFFDETNLDGHGTLLKSSTCSNNLEKKPSPLSPTCYILSFDGVDYPQHNPALVSSENRAQDHCIELPNSHQRTKKARNSSASEVHIMAERKRRQELTKSIVALSSTIPSLKKKDKAHVVREAVNYVKELEGRVRVLENQNRKKYTESVILMKKTQLCIKEGTDDILSSCDGRSGRNIEELPEVEATVLQKEVLIGIHCHKQKQSFLKILTFLNHNHLSVTSTSVLPFGTSTVKITTIAQVRYKTISF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00797 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 230 IPR036638 GO:0046983
Seca1g00797 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Seca1g00797 328 Gene3D - 149 226 IPR036638 GO:0046983
Seca1g00797 328 Coils Coil 200 227 - -
Seca1g00797 328 PANTHER BHLH TRANSCRIPTION FACTOR 40 322 - -
Seca1g00797 328 SMART finulus 167 216 IPR011598 GO:0046983
Seca1g00797 328 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00797 Seca-Chr1 10169748 10172034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00797 154 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.023 2.13e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g00797 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00797 - - aprc:113863851 215.698