Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00793 ATGGTTCTGAGTATTCAAATTTTCAGTGGTTGTGTTATTGTTGGTTTCTTTCTGTTGATTAGTTGTGGCATAACCTATGGGACTGAGAGTGATATCTTCTGCTTGAAAAGTGTAAAGGCTTCACTTGTAGACCCTTACAATTATTTGCAATCCTGGAATTTTAACAACAATACAGAAGGGTTTATCTGCAAGTTTACTGGGGTTGAATGCTGGCATCCTGATGAGAACAGGGTCTTGAATCTCAAACTGTCCAACATGGCACTCAAGGGTCAGTTTCCTCGTGGCATTCGAAATTGCTCAAGCTTAACAGGATTAGATTTTTCAATTAACAGACTCTCTCAAGCCATTCCAGAAGATATATCTACCCTTATTACATATGTTACATCTCTTGATCTATCTTCAAATGATTTCACTGGGGAGATCCCTGTGTCCCTTGCAAACATTACCTATCTTAATACCATTAACCTTGACCAAAACCAACTCACTGGTCAAATTCCTGCACAATTTGCTCAGCTCTCACGGCTTAAGTCGTTTAGTGTTGCCAACAACCTTTTGACAGGGCCAGTTCCAAACTTTCCTAATGGTATAGCTACAGCAGAAAGATATGCAAATAATTCAGGCCTCTGTGGTGGTCCCTTGGAACCTTGCCAGGCCGAGTCTTCCAAGAGTAACTCTGCAGTCATAGCTGGAGCAGCTGTTGGTGGTGTAACTGTTGCAGCATTTGGATTGGGCATTGGATTGCTCTTCTATGTGCGTCGTGTCTCTTATAAGAAAAAGGAAGAAGACCCTGAAGGAAACAAGTGGGCAAGAAGTCTCAAGGGAACTAAAACAATAAAGGTTTCTATGTTTGAGAAATCAATTTCAAAAATGCACTTGAGTGATCTCATGAAGGCTACTAGTAACTTCAGTAAAAGCAATATTATTGGGTCTGGAAGATCAGGAACTTTTTACAAAGCTGTCCTTGATGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAACTTCTGTCTGAGATGACTACACTAGGGTCAGTCAGACATCGTAATTTGGTTCCTCTTTTAGGTTTTTGTCTGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTACATCCTGCAGATGGTGGGAGCACCATGGAGTGGTCTCTAAGGCTCAGAATTGCAATTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAATCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAATCCAATTGATACACATTTGAGTACTTTTGTAAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTATACAAAAACTCTGGTGGCTACACCTAAGGGGGATATTTACAGCTTTGGGACTGTGCTTCTTGAATTGGTAACAGGTGAAAGACCTACCCATATAGCTAAAGCTCCAGAAACTTTTAAAGGAAGTTTGGTAGAATGGATTACTCAGCTCACAAGCAACTCTGAACTCCATGATGCCATTGATGAATCACTAGTTGGGAAGGGTGTTGATCAAGAGCTTTTCCAATTCCTGAAGGTTGCATGCAATTGTGTTACAGCAAATCCAAAGGAGAGGCCAACTATGTTTGAGGTATACCAGCTTCTAAGAGCCATTGGGATTGGATATAATTTCACAATTGAGGATGAGATAATGGTACATACAGATACTGCTGATACTGATAACTTAGAAGAGCTTATTGTAGCTCGAGAGGGAAATAATTGA 1845 0.4092 MVLSIQIFSGCVIVGFFLLISCGITYGTESDIFCLKSVKASLVDPYNYLQSWNFNNNTEGFICKFTGVECWHPDENRVLNLKLSNMALKGQFPRGIRNCSSLTGLDFSINRLSQAIPEDISTLITYVTSLDLSSNDFTGEIPVSLANITYLNTINLDQNQLTGQIPAQFAQLSRLKSFSVANNLLTGPVPNFPNGIATAERYANNSGLCGGPLEPCQAESSKSNSAVIAGAAVGGVTVAAFGLGIGLLFYVRRVSYKKKEEDPEGNKWARSLKGTKTIKVSMFEKSISKMHLSDLMKATSNFSKSNIIGSGRSGTFYKAVLDDGTSLMVKRLQESQHSEKELLSEMTTLGSVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDQLHPADGGSTMEWSLRLRIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDIYSFGTVLLELVTGERPTHIAKAPETFKGSLVEWITQLTSNSELHDAIDESLVGKGVDQELFQFLKVACNCVTANPKERPTMFEVYQLLRAIGIGYNFTIEDEIMVHTDTADTDNLEELIVAREGNN. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00793 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 376 - -
Seca1g00793 614 FunFam Leucine-rich repeat receptor-like protein kinase 377 585 - -
Seca1g00793 614 Gene3D Transferase(Phosphotransferase) domain 1 377 591 - -
Seca1g00793 614 CDD STKc_IRAK 308 576 - -
Seca1g00793 614 ProSiteProfiles Protein kinase domain profile. 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00793 614 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Seca1g00793 614 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
Seca1g00793 614 FunFam Nuclear pore complex protein NUP107 28 191 - -
Seca1g00793 614 SUPERFAMILY L domain-like 28 196 - -
Seca1g00793 614 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
Seca1g00793 614 Pfam Protein kinase domain 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00793 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 192 - -
Seca1g00793 614 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00793 Seca-Chr1 10125473 10127756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00793 11 590 Receptor kinase-like Gene Family AT3G28450 45.641 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Seca1g00793 Pkinase 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00793 - - gmx:100817267 1022.31