Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00785 ATGGATGGAGCTATTGAGGTAAATCAAGGCAACAACATTTTGTCTTTAGAGTTACAGCAAGCACTCGAAGCCCCATTTGATTTAAATGAGCTGCCATTAGAAGAAGAAAATCTTCCTAATGATTTGGATACAATATTTGAACCATTTGTTGGTCAATGTTTCTCAAACGAGGAAAAAGCTTTGGAATTTTATCATAGATATGCTAAGCAACATGGTTTTTCAGTTCGAAAGGCTCGCTTTGATAAAAATAAAAATAGAGAAGTTAGAAGGTGTGATTTCTCTTGTCATCACGCAGGAAGGCAACCACTGAAAATTGTTTACCCATCAAAGGATCAACAACATCAATTATCAGCACGTTGTGACTGCAAGGCTCATATGCGAATTAAACTTTAA 393 0.3588 MDGAIEVNQGNNILSLELQQALEAPFDLNELPLEEENLPNDLDTIFEPFVGQCFSNEEKALEFYHRYAKQHGFSVRKARFDKNKNREVRRCDFSCHHAGRQPLKIVYPSKDQQHQLSARCDCKAHMRIKL. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00785 130 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 23 129 - -
Seca1g00785 130 Pfam FAR1 DNA-binding domain 62 129 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00785 Seca-Chr1 10087186 10087578 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g00785 FAR1 1.5e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00785 - - cqi:110722691 102.834