Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00771 ATGGCCGGCTTAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAACGCCCTGACCTTGAAGATCATGATGATGATGAGAATCAAGACCTTGATGGTACCAACAATAGCAATGAAGGGTTTGACCTAGTTTCACCAAATCAAGGTTCTGGAGGTGATGTTGTTGGTAGAAGGCCAAGGGGTAGACCACCAGGTTCAAAGAACAAAACAAAACCACCGGTGATCATCACAAGAGAGAGTGCAAATACCCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGTTGTGATGTCTTTGACTCTGTGGCTACCTATGCAAGGAAGCGTCAAAGAGGGATCTGTGTCCTCAGTGGTAGTGGAACTGTCACTAATGTCACGCTCCGGCAGCCGGCTGCGGCCGGAGCGGTAGTGACGCTTCATGGAAGATTCGAAATACTTTCATTGTCAGGGTCATTCCTACCACCTCCTGCTCCACCAGGTGCTACTAGTTTGAGTGTGTTCCTTGGTGGAGGTCAGGGTCAAGTTGTTGGTGGGAATGTTGTTGGTCCTTTGGTTGCTTCTGGGCCTGTTATTGTTATTGCTTCATCATTTACTAATGTGGCATATGAGAGGTTGCCTTTGGATGAGGATGAATCTTTGCAGATGCAGCAAGGGCAATCATCTACTGGAGGCGGCGGTGGCGGTGGCAGTGGTGGAGTTAATAATAACTCTTTTCCTGACCCATCTTCAGGGCTACCATTCTTCAATTTGCCCCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGAAACTCTGGTGGAAGGCAATCTTATTGA 819 0.4799 MAGLDLGSASHFVHRLQRPDLEDHDDDENQDLDGTNNSNEGFDLVSPNQGSGGDVVGRRPRGRPPGSKNKTKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSTGGGGGGGSGGVNNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00771 272 MobiDBLite consensus disorder prediction 212 243 - -
Seca1g00771 272 Gene3D - 85 220 - -
Seca1g00771 272 MobiDBLite consensus disorder prediction 15 75 - -
Seca1g00771 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 199 IPR005175 -
Seca1g00771 272 CDD DUF296 86 168 IPR005175 -
Seca1g00771 272 ProSiteProfiles PPC domain profile profile. 82 219 IPR005175 -
Seca1g00771 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 227 IPR014476 GO:0003680
Seca1g00771 272 MobiDBLite consensus disorder prediction 211 246 - -
Seca1g00771 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 213 - -
Seca1g00771 272 FunFam AT-hook motif nuclear-localized protein 85 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00771 Seca-Chr1 9878018 9879614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00771 1 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 62.829 2.44e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00771 - - gmx:100814613 409.453