Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00767 ATGGGTGTGGCTCAAAACATTCTTGATATGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGGGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGGACCTAAATATCAAGAGATTGTTAACATTCGCTTAGGAGATGGAACTACTAGACGTGGACAAGTTCTAGAAGTTGATGGCGAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCGCTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCAATTGATAATGGTCCACCCATATTACCTGAGGCTTACTTGGACATATCGGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAAATATGTCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAATCTGATAATCTTCTTGAGGATGGAGGAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACCCCTCGCATTGCTCTTACGACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACGGATATGAGTTCCTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGTAGACGTGGGTATCCCGGATACATGTATACAGATCTTGCAACAATATATGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACTGGATATATTACTGAGGGACAGATATATATTGACAGGCAGCTGCATAACAGGCAGATATATCCACCAATCAATGTTCTTCCATCGCTGTCTCGATTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTTACTCAAGGAGCTTATGATACCCGCAACATCTTCCAGTCTCTGGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGATCAGTACTACAGCCGAGATGCCGGTAACTGA 1467 0.4308 MGVAQNILDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00767 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Seca1g00767 488 Gene3D - 29 487 - -
Seca1g00767 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Seca1g00767 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Seca1g00767 488 NCBIfam V-type ATPase subunit B 20 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Seca1g00767 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Seca1g00767 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Seca1g00767 488 CDD V_A-ATPase_B 92 385 - -
Seca1g00767 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Seca1g00767 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Seca1g00767 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 485 IPR022879 -
Seca1g00767 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Seca1g00767 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00767 Seca-Chr1 9837573 9843779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00767 1 488 Primary Pumps ATPases(2) AT4G38510 96.721 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00767 K02147 - cpap:110818953 947.962