Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00750 ATGGCCTCTCCTTCTTCCCCCACAGATTCCAACCCTCCTTCTGCCGTCCCTCTCCCCCTCCCGGCTCCGCCTCCCTCCACCTCTCGCCGCCTTCCTCCGCCGTGCTGGACTCCTGAAGAAACCGCAGCCCTCATCGACGCCTACCGTGACAAATGGTACTCCCTTGGCCGTACCAATCTCAAAGCCACCCACTGGCAAGAAGTCGCCGACGCCGTCACCGAACGGTGCCCCAACGCCTCCCCCACCGCCAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAGCTCAGAAAACGCTACCGTTCTGAGATCCAGCGGCTCCGTTCCCTCCCTGTTCCTCGCTCTCGCTCTTCATCCTCTTGGGTCCACTTCAAATCCATGGATTCCATGGAAAAAGGTCCATCCCCTCCTCCAAAACCCGACAACAACCTTAACCACCGTGAAACCCTCGATGATCCCGATGATCTCGACGATGACGACGATCTCTACGAGGAATTCAAGAACGGTTCCAACACGAGGAGCCTCGACAAGTTGTACAGGAACGGAATGGGTGGTGGCGGTGGCGGTAGTGGGGTCGGGTTTCGGATCCGGATCCCAACTGGGGTGAGCGTTGCGCAACCAGGGTCGAAGTTTTTTGGGAATCAGAAACTGGGTAACAACCCCACCGATTCGGGTTCACGTGGGTACACCAATGGTGGGAGTGGTGGTTCAGCCAGGGCTGTGAAGGATCGGGTCGGGTTAGGGAAGAGGGAGAGAGACCCGGTTGGTGAAATGGTGAGTGCGATCAAGGTTTTGCGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGAGAGATCGAAACTATGCGAATGGAGATGGAAATGAAGCGCACAGAGATGATTCTGGAATCACAGCAGAGGATCGTTGAGGCATTTGCAAAAGCAGTTTCTGAGAAGAAGAAGAAAAAGGGTAACGCGATACCTTCACCGTCAGAATCATAG 993 0.5569 MASPSSPTDSNPPSAVPLPLPAPPPSTSRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVTERCPNASPTAKTAVQCRHKMEKLRKRYRSEIQRLRSLPVPRSRSSSSWVHFKSMDSMEKGPSPPPKPDNNLNHRETLDDPDDLDDDDDLYEEFKNGSNTRSLDKLYRNGMGGGGGGSGVGFRIRIPTGVSVAQPGSKFFGNQKLGNNPTDSGSRGYTNGGSGGSARAVKDRVGLGKRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKKKGNAIPSPSES. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00750 330 SMART 118neu2 43 135 IPR006578 -
Seca1g00750 330 MobiDBLite consensus disorder prediction 10 32 - -
Seca1g00750 330 FunFam Trihelix transcription factor ASIL2 36 102 - -
Seca1g00750 330 Pfam Myb/SANT-like DNA-binding domain 34 130 IPR044822 -
Seca1g00750 330 MobiDBLite consensus disorder prediction 209 247 - -
Seca1g00750 330 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 315 IPR044823 -
Seca1g00750 330 MobiDBLite consensus disorder prediction 209 233 - -
Seca1g00750 330 MobiDBLite consensus disorder prediction 111 125 - -
Seca1g00750 330 MobiDBLite consensus disorder prediction 107 179 - -
Seca1g00750 330 Coils Coil 90 110 - -
Seca1g00750 330 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Seca1g00750 330 Gene3D - 36 102 - -
Seca1g00750 330 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00750 Seca-Chr1 9680857 9681849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00750 35 130 Trihelix Transcription Factor Family AT3G14180 34.375 1.62e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g00750 Myb_DNA-bind_4 2.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00750 - - mtr:11426900 372.089