Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00741 ATGCTCCTCCATTCTCTGCATCTCCCAACTCCACCATCTCACTCTCACTCTCCAAACCTTATCCCAAACCGTTACCCTAACACAACCGGTTACATCAAGTTCCGAACAACCTACCGTGAAAACCTCCGTTACCTTAAAACCTTAACCATAATCGACCCAAAAACCAAACCCAACAACCTCCCTCTCCCCGACGCCGTCGACCACATCCTCATAACCCTCGACTTCCTCAAATCCCATTCCTTCTCCGACGCCGACATCCCCCGCTTGTCCCAACACTGTCCCCACCTCTTCTCCACCTCCGTCGACCCCACCGACATCGTCCCTGTCTTCAACTTCCTCTCCGGCGACCTCCGCGCCACCGCCGACGAGTCCCGCGGCCTCATCCTCCGTTGCCCCAAACTCCTCTTCTCCGACGCTGACCTCTGCCTCCGTCCCACGCTCCAATTCCTCCGGCGCGTCGGGGTTCGCGACCTGAACCGGCCAACGAACCGGAACGCGCACCTGCTGAACACGCGCGTGGAGAAGCTGCGCGTGAGGGTGAGGTTCCTTCAGGATGTTGGTTTCTCGTACGAGGAGGCGATGAACGCTTGTGCGAGGTTGCCGGCGATTTTCGGGTACGATGTGGAGAACAATTTGTGGCCGAAATTCTCTTATCTAGTGAAGGAGATGGAGAGGGAGTTGGAGGAGTTGAAGAAGTTTCCTCAATACTTTGGGTTCAGTTTGGAGAAGAGGATTGTGCCAAGGCATTTGCATTTGAAAGAAAGGGGTGTTAGGATTCCCTTGAACAGAATGTTGCTGTGGGGTGATGACAAGTTCTATACTAAATGGAAGTGA 834 0.5432 MLLHSLHLPTPPSHSHSPNLIPNRYPNTTGYIKFRTTYRENLRYLKTLTIIDPKTKPNNLPLPDAVDHILITLDFLKSHSFSDADIPRLSQHCPHLFSTSVDPTDIVPVFNFLSGDLRATADESRGLILRCPKLLFSDADLCLRPTLQFLRRVGVRDLNRPTNRNAHLLNTRVEKLRVRVRFLQDVGFSYEEAMNACARLPAIFGYDVENNLWPKFSYLVKEMERELEELKKFPQYFGFSLEKRIVPRHLHLKERGVRIPLNRMLLWGDDKFYTKWK. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00741 277 PANTHER CGI-12 PROTEIN-RELATED 174 275 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 Gene3D Transcription termination factor 3, mitochondrial 53 277 IPR038538 -
Seca1g00741 277 SMART mt_12 194 226 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 SMART mt_12 159 189 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 SMART mt_12 227 258 IPR003690 GO:0003690|GO:0006355
Seca1g00741 277 FunFam Transcription termination factor MTEF1, chloroplastic 36 277 - -
Seca1g00741 277 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g00741 277 Pfam mTERF 125 272 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00741 Seca-Chr1 9588747 9589580 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca1g00741 mTERF 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00741 K15032 - gmx:100812333 402.519