Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00739 ATGGAAGGAGAGAGAGGTGGTGTTCCCAATTATGAGCTTCAAGTTTCATTCTCCCCACAACCCATAATCCACCAAATGGGTTTTGCTCAATTTGAAGAAAATAATCAAGTCCTTGGCCTCTTGTCACCTTCTTCACAATCTCAATCTTCTCAGCTCTCTCAATCCTTAAACAGTGGCGCCGCCGCCAGCACCACCGCCGCCGCCACAACCATCGGATTCAGTCATAACGAACTGGTCCCCAGAACATGGAATAACGACCAGGTGGGAACTCTGGATCCTAAGGCTGTTAATGATGAAAATTGCACTGGAAACGCTAGTGATGGCAATAACAATTCATGGTGGAGGACTAGTGCAGCTACAGAGAAGAGCAAGATGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTCGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGCACAGCTTGA 513 0.4522 MEGERGGVPNYELQVSFSPQPIIHQMGFAQFEENNQVLGLLSPSSQSQSSQLSQSLNSGAAASTTAAATTIGFSHNELVPRTWNNDQVGTLDPKAVNDENCTGNASDGNNNSWWRTSAATEKSKMKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPSTA. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00739 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 167 IPR044810 GO:0003700
Seca1g00739 170 Pfam WRKY DNA -binding domain 148 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00739 170 SUPERFAMILY WRKY DNA-binding domain 139 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g00739 170 ProSiteProfiles WRKY domain profile. 142 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g00739 170 Gene3D WRKY domain 134 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00739 Seca-Chr1 9556987 9559863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00739 3 167 WRKY Transcription Factor Family AT2G44745 51.163 6.93e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g00739 WRKY 4.3e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00739 - - pvu:PHAVU_008G0481000 231.491