Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00732 ATGGAACACAAGTTCATGGTGATTCTAGCATACTGGCGGATTTTGTTCATATTTCTTTGTGTCATTCTAACACCTCAAGCTGCAGCTGAAGATAGTGAAGCAAATGCTCTGTTGAAGTGGAAAAACAGCTTTGAAAATCAAAGCCAAGCTGTATTGTCAACTTGGACAGGTACTAATCCATGCAAATGGAAAGGAATTATGTGTGACAAATCCAACTCTGTCTCTGCAATAAATCTTGAAAATTATGGACTAAAAGGTACACTCCACACTCTCAGTTTCTCCTCATTCCCCAACCTCCTCAGCCTAAATATCTTAAGCAACTTCTTTCATGGGACCATTCCCCCACAAATTGGTAACTTGTCAAAAATAAATGTTTTGAACTTTTCTTCAAATCCTCTTGATGGTTCCATCCCTCAAGAAATGTGGACATTAAGGACTTTGCATAGGCTTGATCTTTCCTTATGTAAACTGAGTGGAGAAATTCCTAATTCTATAGCAAACTTGTCCAACCTATCATTTCTAGATTTAGGTGGTAACAAATTTTCTGGCTACATTCCTCCAGGGATAGGAAAATTGAACAAATTGGAGTATCTAGCTATTGCAGAAAATAAATTTTTTGGTCCCATTCCTCAAGAAATTGGAATGTTGACAAAGCTTAGGCTTATGGATTTGTCACTGAACTCTCTCTCTGGTACTATCCCAACAACAATAGGCAACATGAGCAATTTAAATAGGCTTGTCATTTCTAATAACACCCTTTTGTCTGGATCAATCCCATCTTCCTTATGGAACATGTCTAACTTGTCCTGGCTTCACCTTTATGGCAATAGTCTTTCTGGATCAATACCATCTTCCATAGGAAACTTAGTCAATTTGAATTCCCTTATACTTTTTTCCAACCACTTTTCTGGACCCATTCCTTCCACTATTGGAAACTTGACAAAGCTCACTGAATTATTCTTGCTTTTTAATAATTTTTCTGGAACAATTCCTGCCTCTATAGGAAATCTGATCAATCTGGATGTCCTCAGTCTCCAAGAAAACAATCTCTCTGGATCTATTCCTACCACAATTGGAAATTTGAAAAGGCTCACTGTCTTGGAACTATCCACCAACAAACTTAGTGGTAGCATTCCAAAGGTCTTGAATAACATTACCAACTGGTATTCCTTGTTATTATCTAGTAATGACTTCATTGGCCATTTGCCATCTCAAATATGCTCTGGTGGGTCACTAGTGTACTTCAATGCTTATGAAAACCATTTAACAGGTCCAATACCAACAAGCTTGAAGAACTGTTCTAGTATTGTTAGACTTAGGCTTGAGGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATCTTAGTGACAATAAATTTCATGGTCACATTTCACCAAATTGGGGGAAGTGCCTTGAACTTAATAGCTTCATTATATCCAAGAATAATATTTCTGGTGGTATACCAGTAGAGCTTGTTGAGGCAACCAAGCTAGGTAGGCTTCATCTTTCTTCAAACCAATTGACTGGGAAGCTTCCAAGGGAATTAGGAAACTTGAAATCATTAGTTGAACTCAAGATCAACAACAATAATTTTTCAGGATACATTCCTACAGAAATTGGACTGCTGCAAAAACTTGAAATTTTGGATCTAGGAGGAAATAAGTTGAATGGCACAATACCAAAAGAAGTCATGATGCTACCCAAGTTAAGGAACTTAAATTTGAGCATAAACAAATTTGAGGGAAGCATTCCCTCTCAGTTAGGACTGTCACTGGAATCTCTTGATCTTAGTGGCAATTTTTTGAATGGAAAAATACCAACAAGTCTTGGAAGTTTGAAACACTTGTCAATGTTTAATCTCTCACATAATAGTCTTTCTGGCACCATTCCTCATACTTTTAGTGAGACATTGGATTTTGTTAACATATCAGATAACAGGTTAGAAGGGCCACTTCCAAACAGTCCAGCTTTTCTTCATGCTCCTTTTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTCACAGGATTGACTCTTTGCACAACTAACCATAGTAAAAAAAGCAACAAAGTCATCTGGTGGGTACTCCTTTCCTTGGGAAGTATAATACTAGTTTTGTTTGGGGTGGGACTTTCAATGTATATATTTTGTGGAAGAAAACAAAAGAAAGAAAGCCAATCTGAAGATGCAAAAGGAGGAGCACTCTTTTCCATATGGAGTTATGATGGGAAAATAATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGTAGGAAGTCAAGGAAATGTTTACAAGGCAGAGTTGGCAGCAGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGTAACAGATGAGGAAATGTCAAATTTCAGTTCAAGGTCTTTTATAAGTGAGATTCAAACCTTGACAGAAATTAAACACAGGAACATTATAAAGCTTCATGGATTTTGCTCACATTCAAGGTTCTCATTTTTGGTTTACAAGTTCTTGGAAGGAGGTAGCTTGGACCAAATACTAAACAATGACACACAAGCATTTGCATTTGATTGGGAAAAGAGAGTGAATGTTGTCAAAGGTGTGGCTAATGCTTTGTCCTATTTGCATCATGATTGCTCACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTTGATCTTGAATATGAAGCTCATGTCTCTGACTTTGGGACAGCTAAGTTTCTGAAGCCTGGTTCACATAGTTGGACCCCATTTGCAGGAACCTTTGGGTATGCAGCTCCAGAGTTAGCTCATACTATGCAAGTGAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCTGGGGATCTCATTTCTTTATTCATGTCACCATCTACAGTGGTAGTGGCTGATGATTTGCTATTGAGTGATGTTTTGGATCAACGACTTCCTCAACCAATAAAACCAATTGATGAGAATGTGATCTTGATTACATGGTTGGCACTTGCTTGTTTGAGTAAAAATCCACGTTCTCGCCCAACCATGGATCAAGTATCTAAGGCACTCGTAATAGGAAAATCACCTCTGAGAGACCAAATTCCCATGATCAAACTAGGCCAACTCCATTGA 3186 0.3751 MEHKFMVILAYWRILFIFLCVILTPQAAAEDSEANALLKWKNSFENQSQAVLSTWTGTNPCKWKGIMCDKSNSVSAINLENYGLKGTLHTLSFSSFPNLLSLNILSNFFHGTIPPQIGNLSKINVLNFSSNPLDGSIPQEMWTLRTLHRLDLSLCKLSGEIPNSIANLSNLSFLDLGGNKFSGYIPPGIGKLNKLEYLAIAENKFFGPIPQEIGMLTKLRLMDLSLNSLSGTIPTTIGNMSNLNRLVISNNTLLSGSIPSSLWNMSNLSWLHLYGNSLSGSIPSSIGNLVNLNSLILFSNHFSGPIPSTIGNLTKLTELFLLFNNFSGTIPASIGNLINLDVLSLQENNLSGSIPTTIGNLKRLTVLELSTNKLSGSIPKVLNNITNWYSLLLSSNDFIGHLPSQICSGGSLVYFNAYENHLTGPIPTSLKNCSSIVRLRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFHGHISPNWGKCLELNSFIISKNNISGGIPVELVEATKLGRLHLSSNQLTGKLPRELGNLKSLVELKINNNNFSGYIPTEIGLLQKLEILDLGGNKLNGTIPKEVMMLPKLRNLNLSINKFEGSIPSQLGLSLESLDLSGNFLNGKIPTSLGSLKHLSMFNLSHNSLSGTIPHTFSETLDFVNISDNRLEGPLPNSPAFLHAPFESLKNNKGLCGNVTGLTLCTTNHSKKSNKVIWWVLLSLGSIILVLFGVGLSMYIFCGRKQKKESQSEDAKGGALFSIWSYDGKIMFENIIEATENFDDKYLIGVGSQGNVYKAELAAGLVVAVKKLHSVTDEEMSNFSSRSFISEIQTLTEIKHRNIIKLHGFCSHSRFSFLVYKFLEGGSLDQILNNDTQAFAFDWEKRVNVVKGVANALSYLHHDCSPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPGSHSWTPFAGTFGYAAPELAHTMQVNEKCDVYSFGVLALEIIMGKHPGDLISLFMSPSTVVVADDLLLSDVLDQRLPQPIKPIDENVILITWLALACLSKNPRSRPTMDQVSKALVIGKSPLRDQIPMIKLGQLH. 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00732 1061 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 385 696 - -
Seca1g00732 1061 ProSitePatterns Tyrosine protein kinases specific active-site signature. 895 907 IPR008266 GO:0004672|GO:0006468
Seca1g00732 1061 Gene3D Transferase(Phosphotransferase) domain 1 850 1047 - -
Seca1g00732 1061 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Seca1g00732 1061 ProSiteProfiles Protein kinase domain profile. 769 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00732 1061 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 378 - -
Seca1g00732 1061 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 282 - -
Seca1g00732 1061 Gene3D Ribonuclease Inhibitor 282 384 IPR032675 -
Seca1g00732 1061 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Seca1g00732 1061 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Seca1g00732 1061 SMART LRR_typ_2 577 601 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 120 144 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 337 360 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 265 289 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 361 384 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 553 576 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 168 192 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 623 646 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 216 240 IPR003591 -
Seca1g00732 1061 SMART LRR_typ_2 506 529 IPR003591 -
Seca1g00732 1061 PANTHER LEUCINE RICH REPEAT KINASE 2 334 1044 - -
Seca1g00732 1061 FunFam MDIS1-interacting receptor like kinase 2 850 1047 - -
Seca1g00732 1061 SUPERFAMILY RNI-like 343 663 - -
Seca1g00732 1061 FunFam Leucine-rich repeat receptor protein kinase MSP1 732 849 - -
Seca1g00732 1061 SUPERFAMILY RNI-like 77 376 - -
Seca1g00732 1061 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00732 1061 SUPERFAMILY Protein kinase-like (PK-like) 754 1041 IPR011009 -
Seca1g00732 1061 Gene3D Phosphorylase Kinase; domain 1 730 849 - -
Seca1g00732 1061 Pfam Leucine Rich Repeat 601 623 IPR001611 GO:0005515
Seca1g00732 1061 Gene3D Ribonuclease Inhibitor 385 695 IPR032675 -
Seca1g00732 1061 FunFam MDIS1-interacting receptor like kinase 2 isoform A 30 184 - -
Seca1g00732 1061 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00732 Seca-Chr1 9471890 9475888 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00732 14 943 Receptor kinase-like Gene Family AT4G08850 44.784 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00732 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00732 - - gmx:100812486 1414.44