Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00729 ATGGTATCCATGTTTGGAAATGAAAAATTCATCAAGATTCTAGTCTGGTGGATTCACTTCATATTCCTTTGGATCCTTATTACAGTCCCTCTGCCTCAAGTTGCTGCTTTTTCCAAAATTGCTTCTTTGGACTCTGATGCCACCACTACTACTTTTCATGATCAAGCTGCAGCTGAAGACAGCCAAGCAAATGTTCTGTTAAAATGGAAAGAGAGTCTTGACAAGCATAGCCAAGATCTCTTGTCAACTTGGACAGGTACTAGTCCATGCAATTGGGAAGGAATTCAGTGTGACAAATCCAACTCTGTCTCTGCAATAAATCTTGAAAATTATGGACTAAAAGGTACACTCCACACTCTCAGCTTCTCCTCATTCCCCAACCTCCTCATCCTTAATATCTATAACAACTTCTTTCATGGGACCATTCCCCCACATATTGGTAACTTGTCCAATGTAAATGTCTTGAACTTTTCTTCAAATTCATTTGATGGTTCCATCCCTCAAGAAATGTGGACATTAAGGAGTTTGCATGGTCTTGACCTTTCCTTATGTCAACTGAGTGGAGCAATTCCTAACTCCATAGCAAACTTGTCCAAACTATCATATCTTGATTTTGGTGGCAACAATTTTTCTGGTTACATTCCTCCTGAGATTGGAAAATTGAACAACTTGGAGTATCTAGCTATTGCAGACAATCACCTTTCAGGTTCCATTCCTGAAGAAATTGGAATGTTGATAAACCTTCAGGTTATTGATTTGTCATGGAACTCTCTATCTGGTAATATCCCAAGAACAATAGGAAACATGAGCAATTTAAATGTTTTATACATTTCTAATAACACCCTTTTGTCTGGACCAATCCCACCCTCCTTATGGAACATGTCTAACTTGTCCTTGCTCCATCTTTATGGCAATAGTCTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATTTGGAGGAACTTGCACTTGATTTCAATGAGCTTTCTGGATCCATTCCTTCCACCATTGGAAACTTGACAAAACTCACAATGATATACTTGAGGTTTAATCATTTTTCTGGTTCAATTCCTGCTTCTATAGGAAATTTAATCAATTTGGATACCCTCAGTCTCCAAGAAAACAATCTTTCTGGATCCATTCCTGCCACAATTGGAAATTTGGTAAGGCTCACTGTCCTGGAATTGTCCACTAACAAACTTGTTGGTAGTTTTGCACATGTCCTGAATAACATTACCAACTGGAATACCTTGTTATTAAATGAGAATGATTTCACTGGCCATCTACCACCTCAAATCTGCTCAGGTAGGAAACTAGTGTACTTCAGTGTAGCTCACAACCATTTAACAGGTCCAATACCAACAAGCTTGAAGAACTGTTCTAGTATTGTTAGACTTAGGCTTGAGGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATCTTAGTGACAATAAATTTCATGGTCACATTTCACCAAATTGGGGGAAGTGCCTTAAACTTAATAGCTTGATGATATCCAACAATAATATTTCTGGTGGTATACCAGTAGAGCTTGTTGAGGCAACCAAGCTAGGTAGGCTTCATCTTTCTTCAAACCACTTGACTGGGAAGCTTCCAAAGGAACTAGGAAACCTGAAATCATTAATTGAACTCAAGATCAGCAACAATCATCTTTTAGGAAATATTCCAACAGAAATTGGATTATTGCAGAATCTTGAAGAATTGGATTTGGGAGGAAACAAGCTGAGTGGCACAATACCAAAACAAGTAGTGGAGTTACCCAAGTTAAGGAGCTTGAATTTCAGCAAAAACAAAATAGAGGGAAGCATTCCCTTGGTGTTTGGCCAATCACAACCTCTTGAATCTCTTGACCTTAGTGGGAATTTGTTGAATGGAACAATACCATCAGTTCTTGGAGAGTTGAAGCAATTGCAATCACTGAATCTCTCATGCAATAATCTTTCTGGCACCTTTCCATCCAGTTTTGATGACATGTCTAGCTTGATTTCTGTCAACATATCACACAACCAGTTAGAAGGGAAACTTCCAAATAATCAAGCCTTTTTTAAGGCTCCAATTGAATCATTGCAAAATAACAAAGGCTTGTGTGGTAACCACACTGGCTTAGTGCTTTGTCCAGCCAACAGCCACAATCAAAAGAGCCATAAAGGAATCCTACTAGTATTATTTCTTATCTTAGGTGCTCTAATACTAGTACTTTGTGGGGTGGGAGTTTCAATGTATATTCTCTGCAGGAGTGCAAGAAAGTCAGAAATACAAGGTAAAGAAGGGAAATCAGAAGAACACTTTTCCATATGGAGTCATGATGGGAAAATGTTGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGACAAATATCTTATTGGAGTGGGAGGGGAAGGATCTGTTTACAAGGCTAAGTTACCTTCAGGTCTAGTTGTTGCAGTGAAGAAACTTCATTTGGGAACAGATGGAGAGAAGCCAAATTTCAAAGCTTTTGAGAATGAAATTAGAGCATTGACAGAAATCAAGCATCGTAACATTGTCAAGCTCTATGGATTTTGCTCACATTCAAGATTCTGTTTCTTGGTTTATAAGTTCTTGGAAGGGGGAAATTTGGCTCAAATACTAAACAATGACACAAAAGCAAGTGAATTTGATTGGGAAAAGAGAGTGAATGTTATTAAAGGTGTGGCCAATGCTTTATCATATATGCATCATGATTGCTGTCCTCCAATAGTTCATCGTGACATATCAAGCAAGAATGTTCTATTGGATTTAGAATATGAAGCTCATCTTTCTGATTTTGGAACAGCTAAGTTTCTGAAGCCTGATTCACACACTTGGACCACATTTGCAGGAACCTTTGGATATGCAGCTCCAGAGCTTTCCCAGACTATGCAAGTGAATGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTTGTTTAGAAATCCTTATGGGAAAGCATCCAGGAGATCTCATTTCTTCTTTGTTATCATCATCTACAGCAACAATGACTTATGATTTGCTATTGATTGATGTGTTAGACCAACGCCCTCCTCAACCTGCCAATTCAATTGTTGGGGATGTCATCTTGATTGCAAAGTTGGCATTTTCTTGCTTGAGTGAAAGTCCTTCTTATCGCCCAACCATGGACCAAGTATCTAAAGAACTTATGATGGGAAAATCACCTTTAGTGGACCAATTCCCCATTATCAAACTTGGACAACTCCACTAA 3285 0.3826 MVSMFGNEKFIKILVWWIHFIFLWILITVPLPQVAAFSKIASLDSDATTTTFHDQAAAEDSQANVLLKWKESLDKHSQDLLSTWTGTSPCNWEGIQCDKSNSVSAINLENYGLKGTLHTLSFSSFPNLLILNIYNNFFHGTIPPHIGNLSNVNVLNFSSNSFDGSIPQEMWTLRSLHGLDLSLCQLSGAIPNSIANLSKLSYLDFGGNNFSGYIPPEIGKLNNLEYLAIADNHLSGSIPEEIGMLINLQVIDLSWNSLSGNIPRTIGNMSNLNVLYISNNTLLSGPIPPSLWNMSNLSLLHLYGNSLSGSIPASIENLANLEELALDFNELSGSIPSTIGNLTKLTMIYLRFNHFSGSIPASIGNLINLDTLSLQENNLSGSIPATIGNLVRLTVLELSTNKLVGSFAHVLNNITNWNTLLLNENDFTGHLPPQICSGRKLVYFSVAHNHLTGPIPTSLKNCSSIVRLRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFHGHISPNWGKCLKLNSLMISNNNISGGIPVELVEATKLGRLHLSSNHLTGKLPKELGNLKSLIELKISNNHLLGNIPTEIGLLQNLEELDLGGNKLSGTIPKQVVELPKLRSLNFSKNKIEGSIPLVFGQSQPLESLDLSGNLLNGTIPSVLGELKQLQSLNLSCNNLSGTFPSSFDDMSSLISVNISHNQLEGKLPNNQAFFKAPIESLQNNKGLCGNHTGLVLCPANSHNQKSHKGILLVLFLILGALILVLCGVGVSMYILCRSARKSEIQGKEGKSEEHFSIWSHDGKMLFENIIEATNNFDDKYLIGVGGEGSVYKAKLPSGLVVAVKKLHLGTDGEKPNFKAFENEIRALTEIKHRNIVKLYGFCSHSRFCFLVYKFLEGGNLAQILNNDTKASEFDWEKRVNVIKGVANALSYMHHDCCPPIVHRDISSKNVLLDLEYEAHLSDFGTAKFLKPDSHTWTTFAGTFGYAAPELSQTMQVNEKCDVFSFGVLCLEILMGKHPGDLISSLLSSSTATMTYDLLLIDVLDQRPPQPANSIVGDVILIAKLAFSCLSESPSYRPTMDQVSKELMMGKSPLVDQFPIIKLGQLH. 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00729 1094 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 414 729 - -
Seca1g00729 1094 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 407 502 IPR032675 -
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 602 723 IPR032675 -
Seca1g00729 1094 SUPERFAMILY Protein kinase-like (PK-like) 787 1074 IPR011009 -
Seca1g00729 1094 FunFam MDIS1-interacting receptor like kinase 2 883 1080 - -
Seca1g00729 1094 Pfam Protein kinase domain 806 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00729 1094 Gene3D Transferase(Phosphotransferase) domain 1 883 1081 - -
Seca1g00729 1094 FunFam Leucine-rich repeat receptor protein kinase MSP1 767 882 - -
Seca1g00729 1094 SMART LRR_typ_2 149 173 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 294 317 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 318 342 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 654 677 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 197 221 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 582 606 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 366 390 IPR003591 -
Seca1g00729 1094 SMART LRR_typ_2 245 269 IPR003591 -
Seca1g00729 1094 ProSitePatterns Tyrosine protein kinases specific active-site signature. 928 940 IPR008266 GO:0004672|GO:0006468
Seca1g00729 1094 PANTHER LEUCINE RICH REPEAT KINASE 2 363 1078 - -
Seca1g00729 1094 ProSiteProfiles Protein kinase domain profile. 804 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 503 601 IPR032675 -
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 310 406 IPR032675 -
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 215 309 IPR032675 -
Seca1g00729 1094 Gene3D Ribonuclease Inhibitor 59 214 IPR032675 -
Seca1g00729 1094 FunFam MDIS1-interacting receptor like kinase 2 isoform A 59 214 - -
Seca1g00729 1094 Pfam Leucine rich repeat 633 691 IPR001611 GO:0005515
Seca1g00729 1094 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Seca1g00729 1094 Pfam Leucine rich repeat 560 619 IPR001611 GO:0005515
Seca1g00729 1094 Gene3D Phosphorylase Kinase; domain 1 765 882 - -
Seca1g00729 1094 FunFam Piriformospora indica-insensitive protein 2 215 306 - -
Seca1g00729 1094 SUPERFAMILY RNI-like 106 413 - -
Seca1g00729 1094 SMART LRR_sd22_2 582 608 - -
Seca1g00729 1094 SMART LRR_sd22_2 245 271 - -
Seca1g00729 1094 SMART LRR_sd22_2 390 416 - -
Seca1g00729 1094 SMART LRR_sd22_2 342 371 - -
Seca1g00729 1094 SMART LRR_sd22_2 294 320 - -
Seca1g00729 1094 SMART LRR_sd22_2 630 662 - -
Seca1g00729 1094 SUPERFAMILY RNI-like 335 693 - -
Seca1g00729 1094 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 309 409 - -
Seca1g00729 1094 Pfam Leucine Rich Repeat 247 268 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00729 Seca-Chr1 9419430 9423386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00729 56 976 Receptor kinase-like Gene Family AT4G08850 44.456 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g00729 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00729 - - gmx:100815688 1532.31