Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00704 ATGGCTTCCACCACCAAAGATTCAGACTTTTCATATTTGAATCACATTCAACAATACCTTCTTGACGATGATTCAAGCATTCTAACACCAAATCATCAACCTATTCCAAACCCTAATTCAAATGCAAAAGCTACAGCGGCGCGTGTAGTGAACGCGCCTCCGACATGGAAGCGTTACCGCGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATCAGAGACCCTAAGAAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAAGAGGAAGCAGCTATGGCTTATGATAAGGCTGCTTTCAAGATGCGTGGCCAAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTCCGATGTGCCGCCGAAGCCGGCAAGAGAGGCGGCTTCGAAACGGTGCTCGCCAGAGCCTTCTTCCTCGGAGGATAGTTGTGAGCAATCACACTCATCACAAGGGTCAAAGAGAAGGAGGAGCATGGTTGATCTATTGAATAAGTTAGCAAAGAATAGAAGCCAAGCTAATAAGGTTGTTAAAATGGAGTTAGATGAAAATGATGTTAATCAATGGGTGAATGAGTTGAGTGATTGGAGTGTAATATTGTGCTCCTAA 618 0.466 MASTTKDSDFSYLNHIQQYLLDDDSSILTPNHQPIPNPNSNAKATAARVVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDKAAFKMRGQKAKLNFPHLIGSDVPPKPAREAASKRCSPEPSSSEDSCEQSHSSQGSKRRRSMVDLLNKLAKNRSQANKVVKMELDENDVNQWVNELSDWSVILCS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00704 205 CDD AP2 57 118 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 MobiDBLite consensus disorder prediction 136 150 - -
Seca1g00704 205 MobiDBLite consensus disorder prediction 117 160 - -
Seca1g00704 205 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 PANTHER DNA-BINDING DOMAIN 43 169 IPR044808 GO:0003700|GO:0009873
Seca1g00704 205 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Seca1g00704 205 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Seca1g00704 205 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Seca1g00704 205 FunFam Ethylene-responsive transcription factor 2 57 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00704 Seca-Chr1 8853237 8853854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00704 16 163 AP2-EREBP Transcription Factor Family AT2G44840 55.263 3.51e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g00704 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00704 K09286 - gmx:102663872 255.373