Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00703 ATGGATTCAGATTTTGCATATTTGGATCACATTCAACTTTACCTACTTGACGATGATTCAAGCATTCAGACACCACGTCATCAACCTATTCCAAATGCAAATGCTGCAGCGGCGCGTGTGGTGAACGCGCCTCCGACATGGAAGCGTTACCGTGGCGTGAGGCGTAGGCCGTGGGGGAAATTCGCGGCGGAGATCAGAGACCCTAAGAAGAACGGTGCTAGGGTTTGGCTCGGAACTTATGTGACCGAGGAAGAAGCGGCTATGGCTTATGACAGAGCTGCTTTCAAGATACATGGTCGAAAAGCCAAGCTGAATTTCCCCCACCTCATTGGCTCTGATGTGGCGCCGGAGCCGATGAGAGTGGCGGCTTGGAAGCGGTGCTCGCCGGAGCCTTGTTCATCGGAGGATAGTTGTGAGCAATCACACTCACAAGGGTCAAAGAGGAAGATTGTTGATATACTAAATGTGTTAGCAAAGAATAGAAGGCAAGCCAAAGTGGTGATGTTGCTCATCAATGGGTGA 522 0.5038 MDSDFAYLDHIQLYLLDDDSSIQTPRHQPIPNANAAAARVVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDRAAFKIHGRKAKLNFPHLIGSDVAPEPMRVAAWKRCSPEPCSSEDSCEQSHSQGSKRKIVDILNVLAKNRRQAKVVMLLING. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00703 173 PANTHER DNA-BINDING DOMAIN 41 141 IPR044808 GO:0003700|GO:0009873
Seca1g00703 173 FunFam Ethylene-responsive transcription factor 2 48 108 - -
Seca1g00703 173 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 PRINTS Ethylene responsive element binding protein signature 89 109 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 CDD AP2 48 109 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 ProSiteProfiles AP2/ERF domain profile. 49 107 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 SMART rav1_2 49 113 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Seca1g00703 173 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Seca1g00703 173 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00703 Seca-Chr1 8784712 8785233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00703 49 135 AP2-EREBP Transcription Factor Family AT2G44840 73.563 3.97e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g00703 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00703 K09286 - gmx:102663872 197.593