Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00688 ATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGCGTCTCAAAGTATAGGGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGAAGGGTTTTTGGAAACAAATACCTCTACCTTGGCACCTACAGTACCCAAGAGGAAGCTGCTCGTGCTTATGATATAGCAGCCATTGATTACAGAGGGATTCATGCTGTAACGAACTTTGATTTGACTACTTACATAAAATGGTTAAATCCTGAACAAGGAAGCACCCCAGAAACAAAACTTGAATCACAGAGAGTATTGTTAGAGTATCAAACAGTGGCTTCCCCACCTAACAGTACTCTGATAGAAGAGTCAAAGTCCTTGGCACTTCACAATAGTATTTTCAGTAGAGATTACCTGAATTTCACTGAAAAGCAACAAGTATTTGGAAACAAAACCTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTGGACTTCTTCTCCGCTCTTCTCTATTCAGAGAATTGGTTGAAAAGAACTCAAATGTGTCTGAAGATAATGAAACTGATGGGGAAGTCACAATTAATGATGATGAGCTTGGTGGAATCTTCTATCATGGCATTGATGATATCCCCTTTGTCAGTGATCCTAACAGATACAACTTAGAATTGAAAGAAAGAGACTTGCATTCAATATTTTGA 720 0.4 MQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIDYRGIHAVTNFDLTTYIKWLNPEQGSTPETKLESQRVLLEYQTVASPPNSTLIEESKSLALHNSIFSRDYLNFTEKQQVFGNKTYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVSEDNETDGEVTINDDELGGIFYHGIDDIPFVSDPNRYNLELKERDLHSIF. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00688 239 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 146 - -
Seca1g00688 239 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Seca1g00688 239 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Seca1g00688 239 Pfam AP2 domain 25 76 IPR001471 GO:0003700|GO:0006355
Seca1g00688 239 Gene3D AP2/ERF domain 25 86 IPR036955 GO:0003700|GO:0006355
Seca1g00688 239 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Seca1g00688 239 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Seca1g00688 239 FunFam AP2-like ethylene-responsive transcription factor 25 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00688 Seca-Chr1 8664871 8666019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00688 52 108 AP2-EREBP Transcription Factor Family AT3G54320 43.860 1.39e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g00688 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00688 - - lja:Lj1g3v2952280.1 372.859