Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00684 ATGAGTCGTAGAGTGAGGAGGAAGGTGGCAAAGAAAGGCAAAGAGAATGTGGGGTTGTCCAGTTTCCCTGAAATTCAAGGCGAGGTTTCTGATTCAGAACGCCAAGGAATTGTTGATTGGAGGTGTTTGCCTGATGATACAGTAATTCAGCTGTTGTCATGCCTGAGTTATAGGGATCGAGCTAGCTTATCATCAACTTGTAGGACATGGAAGCTTCTTGGTAGCTCCCCATGTTTGTGGACTTCTCTGGATCTTCGTTCCCACAGGTTTGATGTCAGCATGGCATCTTCACTTGCTCCCAGATGTATGCATCTTCAGAAGCTTAGGTTTCGCGGGGCGGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAGGAACTTGCGAGAAATAAGTGGTGACTATTGTAGGAAGATTACTGATGCAACTCTTGCTGTGGTTGCGGCTCGGCATGAGTTCCTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCAGTAGTGATGCTATTAAAGCAATAGCCCATTGCTGTCCTAGATTGAGTAAACTTCGACTCTCGGGCATTAGGGATGTCAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGGTTCATTGATTGTCTGAATGTTGATGAGCTTGCACTGGGAAACGTGTCATCAGTTCGTTTCCTTTCTGTTGCGGGGACATCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAGCTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTCAAGATTGTTATCCTTATCACAGAATTTGAGGGTTCTGATTGCTTTGAATTGTCCTATATTTGAAGAAGACACTAGCTTCTCTGCTAGTAAATATAAAAACAAGTTATTAATTTCCCTTTCTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGGTAATACAAAGAGAGGAAAGAATGTGTTTTTGGACTGGAGGACTTCAACGAATAATGATAAGAACCTTAATGAAATTATACCCTGGCTTGAATGGATGCTATCCCATACACTCCTGCGTTCTGCTGAGAGCCCCCAACAGGGCCTTGATAGTTTCTGGGTTGAACAAGGTGGATCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCTACAGGTCTTGCTACTTTTGTTGTAATTGATGATGAAAATGCTAGCATTGATTGTGGAAGGGCTGAAGCAGTTATGCGAGACGGTGGCATACGCCTCCTTCTTGGCCTGGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTTGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTGGTTTGGCTAGGTCAACAAACAAGCTAGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTAAAGCTGGTGGAATACAAGCACTAGTGGATCTTATATTCAAGTGGTCCTCTAGCGGGGATGGAGTTTTAGAACGAGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCAATAGCTGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTAACACGTTCTCCACATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCGTTTGATGATAGAAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTACAGGCCTTGGTTACTCTTGCCCAATCTTGCTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCACTCTGGGGATTGTCAGTTTCTGAAGCTAATAGCATTGCCATTGGACGAGAAGGTGGTGTTGCGCCTCTGATTGCGCTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCCGGAGCACTATGGAATCTTGCTTTTAACCCTGGTAATGCTTTACGAATAGTGGAGGAAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTGTCAAAAATGGCACGATTTATGGCTGCGTTAGCATTGGCTTACATGTTTGATGGGAGGTAA 2277 0.4537 MSRRVRRKVAKKGKENVGLSSFPEIQGEVSDSERQGIVDWRCLPDDTVIQLLSCLSYRDRASLSSTCRTWKLLGSSPCLWTSLDLRSHRFDVSMASSLAPRCMHLQKLRFRGAESADAIIHLRARNLREISGDYCRKITDATLAVVAARHEFLESLQLGPDFCERISSDAIKAIAHCCPRLSKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDELALGNVSSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVSRLLSLSQNLRVLIALNCPIFEEDTSFSASKYKNKLLISLSTDIFKGLASLFFGNTKRGKNVFLDWRTSTNNDKNLNEIIPWLEWMLSHTLLRSAESPQQGLDSFWVEQGGSLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSTNKLVAEEAAGGLWNLSVGEEHKGAIAKAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVAIAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVTLAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGR. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00684 758 SMART fbox_2 43 83 IPR001810 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 676 713 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 545 584 IPR000225 GO:0005515
Seca1g00684 758 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Seca1g00684 758 Gene3D - 359 502 IPR011989 -
Seca1g00684 758 Gene3D - 503 590 IPR011989 -
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Seca1g00684 758 PANTHER PROTEIN ARABIDILLO 1 1 758 - -
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Seca1g00684 758 Gene3D Ribonuclease Inhibitor 33 313 IPR032675 -
Seca1g00684 758 FunFam Protein ARABIDILLO 2 355 502 - -
Seca1g00684 758 SUPERFAMILY RNI-like 42 293 - -
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Seca1g00684 758 SMART LRR_CC_2 150 177 IPR006553 -
Seca1g00684 758 SMART LRR_CC_2 124 149 IPR006553 -
Seca1g00684 758 SMART LRR_CC_2 178 203 IPR006553 -
Seca1g00684 758 SMART LRR_CC_2 204 229 IPR006553 -
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 589 629 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 715 756 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 417 457 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 630 673 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 674 714 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 543 584 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 458 498 IPR000225 GO:0005515
Seca1g00684 758 SMART arm_5 499 542 IPR000225 GO:0005515
Seca1g00684 758 Gene3D - 591 758 IPR011989 -
Seca1g00684 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Seca1g00684 758 SUPERFAMILY ARM repeat 369 744 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00684 Seca-Chr1 8628703 8640430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00684 571 758 U-box Gene Family AT2G23140 35.979 2.63e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00684 - - gmx:100819086 1330.85