Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00672 ATGATGTTATGGAAGAACTTGGATTTGGTCCTAATGGTGGTCTTGTATATTGCATGGAGTATCCTTTTGTTTTGCTTTTTTGAAATTTTTTTGTTGTCTTTCTCCTTTACAAGAGAGTATGGTAGCCTAATTCCAAATCTCAGATTCTTACTTATATTTACTTCATATACTAAACCGCATGACTGGAGCCACTACTGGTTGCTGATATGGGAGACACATTTCCATCTATCCATCTCTCAATTTGTCACTTTGCAAGATTTGGCGGACACCTATCTGCCCCCATTTAACTTTGCATCCAGAGGCTCGAAGAATGCTCGTGAAATTTTGAAGCACTTTGGTCCTGCTCCTGGTGTGCTACACAGCCACACAAAGCCTTATGTGCGATCAAAGGGAAGGAAGTTCGAGGGGGCTGGAGGAAGGAGGAAAAACCGAGGATTTAGAGTTTGA 447 0.4161 MMLWKNLDLVLMVVLYIAWSILLFCFFEIFLLSFSFTREYGSLIPNLRFLLIFTSYTKPHDWSHYWLLIWETHFHLSISQFVTLQDLADTYLPPFNFASRGSKNAREILKHFGPAPGVLHSHTKPYVRSKGRKFEGAGGRRKNRGFRV. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00672 148 Pfam Ribosomal protein 60S L18 and 50S L18e 100 148 IPR021131 -
Seca1g00672 148 Gene3D - 75 148 - -
Seca1g00672 148 PANTHER 60S RIBOSOMAL PROTEIN L18 98 148 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00672 Seca-Chr1 8421363 8425040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00672 100 148 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 75.510 2.14e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00672 K02883 - thj:104802791 88.9669