Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00661 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGATGAATAGGGATGTTGCTGAGGAGGAAATTGGTTGTTGTGTTAATTTTAGTTTCATTGGGAGGTGTATACCTTCAAGATCAAAGGTTAATAGCTCCATAAGTGGCATCAGTGCTCACAGTGTGGAAAAAACATCTGCATCTGAAAAAAGCAAAACGGAAACAAGTGCTCCCCCAGGGTCCTCTACAACAACTAGTAATATAGAAAGTATCCCATCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTCACATTCAATGAGCTTAAGTTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGTTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACAGGCCTTACTGTCGCAGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTCGGTGACCTTGTTCATCCGAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTTTATGAGTTTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCAGAGGCCTATAATCTATCGCGATTTCAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCCGAGTATGTAATGACTGGTGAGTTTCCTTTTTTAATGTTAATTTGTGTTTCATTAATTTTAGATTTCACTACCTGA 981 0.4159 MGFRNNAIQAGSLDVGKSKGRMNRDVAEEEIGCCVNFSFIGRCIPSRSKVNSSISGISAHSVEKTSASEKSKTETSAPPGSSTTTSNIESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGEFPFLMLICVSLILDFTT. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00661 326 ProSiteProfiles Protein kinase domain profile. 122 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00661 326 MobiDBLite consensus disorder prediction 71 93 - -
Seca1g00661 326 Gene3D Transferase(Phosphotransferase) domain 1 208 312 - -
Seca1g00661 326 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Seca1g00661 326 SUPERFAMILY Protein kinase-like (PK-like) 91 310 IPR011009 -
Seca1g00661 326 Gene3D Phosphorylase Kinase; domain 1 94 207 - -
Seca1g00661 326 PANTHER OS01G0588500 PROTEIN-RELATED 75 309 - -
Seca1g00661 326 Pfam Protein kinase domain 125 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00661 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Seca1g00661 326 MobiDBLite consensus disorder prediction 61 93 - -
Seca1g00661 326 FunFam Os07g0541700 protein 208 296 - -
Seca1g00661 326 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00661 Seca-Chr1 8200369 8204611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00661 80 310 Glycoside Hydrolase AT3G07070 51.852 7.09e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca1g00661 Pkinase 1.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00661 - - gmx:100305393 571.237