Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00658 ATGACAGGAATTAAGGTTACCTTTATTATCCTCTTGGTGGCTTTTGCCATTACTATTCCACGTCTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCACAAGCCGATGAGGCACATGAAATTGCTCTTAAGTCCTATGTGCCCAACCCCGAAAACGTGAAAGACGAGCTTAATGTAAATGTTCATTTGGGGCAACCTGAGACACATGTGGATGAAAAGCAAGATCATGACAAGGTTACAAATTAA 252 0.4127 MTGIKVTFIILLVAFAITIPRLEAGIAEFDDFLKAQADEAHEIALKSYVPNPENVKDELNVNVHLGQPETHVDEKQDHDKVTN. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00658 83 Pfam Pectate lyase, N terminus 26 65 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00658 Seca-Chr1 8167541 8167792 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00658 8 79 Polysaccharide Lyase AT2G02720 30.556 3.18e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00658 - K01728 gmx:100780236 91.6633